Prunus persica (peach): 18766405
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Entry
18766405 CDS
T03092
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18766405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pper03041
]
18766405
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18766405
Spliceosome [BR:
pper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18766405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
nSTAND_NTPase5
ABC_tran
SRP54
T2SSE
Cas3-like_C_2
TsaE
Motif
Other DBs
NCBI-GeneID:
18766405
NCBI-ProteinID:
XP_020425369
LinkDB
All DBs
Position
G8:13459462..13462408
Genome browser
AA seq
949 aa
AA seq
DB search
MAKQFRKKVLSREDDEDETAQNRKEKERGVKRQPTSPHEANDDDDDGSESEQERLCDQRE
REQLDRNIRERDAAATRKLSEQKEAFATRRSNIVGDVETLRKVSRQEYLKKREANKLKEL
GESIEDGEYLYKGVKLTEVEYNRLSYEKKIYELATKHEAATHHDQYYRIPEPYDDHEGGV
NQEKRFSVALQRCWDDDLNGRDKKSNQFAEQKAWEDQQIGKATLKFGSKNKRRKCDEEYD
FVFEDQIEFVKKSVLLEGDQMIANGNVDVGKVQPSHQLDKLREERKTLPIYAFRERLLQD
VEKNQVLIIVGETGSGKTTQIPQYLHEAGYTKGGKKIGCTQPRRIAAMSVAARVSQEMGV
KLGHAVGYSIRFEDCTSEKTVLKYMTDGMLLREFLVEPDLASYSVVMVDEAHERTLSTDV
LLGLLKDIARYRPDLKLIISSATLDAEKFSDFFDSAKILRIPGRRYPVDIHYMEAPQADY
LDAAIVAALQVHVTQPPGDILVFLTGQEEIETAEEIFKHRTRGLGTKISELIICPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRSGMESLQV
TPISKASSMQRAGRAGRTGHGKCFRLYTSYNYDSDLDDSTVPEVQRTNLANVVLTLKSLG
IHDLVNFEFMDPPPCEALLKALELLFALGALNKVGELTKVGRRMAEFPVDPMLSKMIVAS
DKYKCSDEVISIAAMLSTGSSIFYRPKDKQVHADTARLRFHSGNVGDHIALLKVYNAWKE
ANYSTQWCYENYIQVRSMKRARDIRDQLERLLERVEIKLSSSNDLEAIKKAVTSGFFPHC
SRLQKNGSYRTIKHPHTAHIHPSSGIMALEHHVLPRCVLYHELVLTTKEYMRQVTEIKPE
WLVEIAPHYYQLNGVVEEDYSTSKKMPRGKGRTSTSKQIPNLVDYSICV
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacagttcaggaagaaggtgttgagtcgagaagatgatgaagatgagactgca
caaaacagaaaagagaaagagagaggggttaaacgacaaccaacttccccacatgaagca
aatgatgatgatgatgatggttcagagtctgaacaagagagattgtgtgatcaaagagag
cgagagcaactggaccgtaatataagggagcgggatgcagccgcaacgcgaaagctatca
gagcaaaaggaggctttcgctactcggagaagcaatattgttggcgacgttgaaacttta
agaaaagtttcaagacaagaatatttaaagaaaagggaggcaaataaattaaaggaactt
ggagaatctatagaagatggggagtacttgtataaaggcgttaagcttactgaagtggaa
tacaatcgattaagttacgagaagaaaatatatgagcttgcgacgaagcatgaggctgct
actcatcatgatcagtactacaggattccggaaccctatgacgatcatgagggcggtgtt
aatcaggagaagcgattctcggtggctttacaacgttgctgggatgatgacctgaatggc
agggataaaaaatcgaaccagtttgcagaacagaaagcctgggaggatcagcaaattggg
aaggcaacattgaagtttggttcgaaaaacaaaaggcgaaaatgtgatgaggagtatgat
tttgtatttgaagaccagattgaatttgtcaagaagtcagtactactggagggtgatcag
atgattgctaacggtaatgttgatgtcgggaaagtgcaaccatcccatcagttggataag
ctgcgggaggagaggaaaacattacctatctacgcatttcgtgagagattgctccaagat
gttgaaaaaaatcaggttcttattattgttggcgaaactggatctggaaaaactacacag
atacctcaatatctacacgaggccgggtacacaaagggaggaaagaagatcgggtgcaca
caaccacggcgaattgctgctatgagcgttgctgccagggtttctcaagagatgggtgtc
aagcttgggcatgcagtcggttattccatccgtttcgaggattgcacctcggagaagact
gttttgaaatatatgacagatggaatgctgctgcgagaattccttgttgagccagatttg
gcaagctacagtgtggtgatggtggacgaggctcacgagagaacactgtcaacagatgtt
ttgttaggattgctcaaggacattgcacgatacagacctgatcttaaactgatcatttca
agtgctactctcgatgctgagaagttcagtgacttctttgattccgccaagattctaaga
atccctgggagacggtatccggttgatatacactacatggaagcaccgcaggctgattac
ctagatgcagcaattgtggctgcacttcaagtacacgtgacacaaccgcctggggacata
ttggtttttctcactggtcaggaagaaatcgaaacagcggaggagatatttaaacacagg
acaagggggttagggacgaaaattagtgagcttataatctgtcccatatatgcaaacctg
cccacggagctgcaggctaaaatctttgagcccacaccggaaggggctagaaaagttgtc
ctcgctacaaatattgcagagacctctctgactattgatgggatcaaatatgtcattgac
cccggcttcagcaagatgaaatcttataatccgaggagtgggatggagtcactgcaagtc
accccgatctcaaaggcatcctccatgcaaagggcaggtcgggctggtcgaacaggccac
gggaagtgcttccggttatacactagttacaactatgacagtgatttagatgattccaca
gttccggaagtgcagcggactaacctcgccaatgttgttctcacgctcaagagcctcggc
attcatgacttggtgaatttcgagttcatggaccctccaccttgtgaagcattactaaaa
gccctggaattgttgtttgcactcggtgcattaaacaaagtgggggagctaactaaagtt
ggtagacggatggcggagttccctgttgatccaatgctatctaaaatgattgtggcctcg
gacaagtacaagtgctcagatgaggtaatctccattgctgccatgctttccaccggtagt
tcaatcttctatcgtccaaaagacaaacaagtacatgctgacactgcaaggttgaggttt
cacagtgggaatgtgggagatcacattgcattgcttaaggtttacaatgcatggaaagag
gcaaattactcgacgcaatggtgttacgaaaactatatacaagttaggagcatgaaaaga
gcaagagacatccgtgatcaactcgagcgcctcttggagagggttgagatcaagctcagt
agctcaaatgatttagaggccataaagaaggccgttacatcaggattcttccctcattgt
tctaggctgcagaagaatgggtcatatagaacaatcaaacaccctcacactgcccatata
caccccagctcagggattatggcattggaacatcacgtgcttcctagatgtgttttgtac
catgaactggtactgactaccaaggaatatatgagacaggtcacagagataaagccggaa
tggttggttgaaatagctccacattattaccagttgaacggggtcgttgaggaggattac
tcaacttcaaagaagatgcctcgtggaaaagggcgtacaagcacttcaaagcaaattcct
aatcttgttgattacagcatatgtgtatga
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