Prunus persica (peach): 18766870
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Entry
18766870 CDS
T03092
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
pper
Prunus persica (peach)
Pathway
pper03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
18766870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18766870
03019 Messenger RNA biogenesis [BR:
pper03019
]
18766870
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
18766870
RNA polymerase I system
18766870
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
18766870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW
KOW7_SPT5
Spt5_N
KOWx_SPT5
KOW5_SPT5
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
18766870
NCBI-ProteinID:
XP_007201759
UniProt:
M5W158
LinkDB
All DBs
Position
G8:1662161..1671792
Genome browser
AA seq
1041 aa
AA seq
DB search
MARHRDEDDDEMDPEEEDEYEPDQVIDEDEEEEEEEQRGGRRSSQKRRRSDFIDDAAEED
DEEEEEDDEDDESYGGGASRQRRNKRPSGSQFLDIEAEVDTDDEEDEDEGEDDFIVDNGA
DLPEDDDGRRMHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVDQQALLPS
VRDPKLWMVKCAIGREREAAVCLMQKYIDKPELQIRSAVALDHLKNFIYIEADKEAHVRE
ACKGLRNIFAQKINLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNV
RQKVTVKLIPRIDLQAIANKLEGREVVKKKAFVPPPRFMNIDEARELHIRVERRRDPMTG
DYFENINGMLFKDGFLYKAVSMKSISSQNIHPTFDELEKFRKPGENGDGDIAGLSTLFSN
RKKGHFMKGDTVIVIKGDLKNLKGWVEKVEEETVHIRPEIKELPKTLAINEKELCKYFEP
GNHVKVVSGTQEGSTGMVVKVEQHVLIILSDITKEHIRVFADDVVESSEVTSGITRIGAY
ELHDLVLLANNSFGVIIRVEREAFQVLKGVPDRPEVALVKLGEIKCKIEKSFPVEVKYKH
KVSVKDVVRVIDGPCEGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKSHACALVGGSRAN
GDRNGDTHSRYDHLRTPPRIPQSPKRFSRGGPPNNYGGRNRGGRGHDGLVGTTVKVRQGA
YKGYRGRVVEVKGPNVRVELESQMKVVTVDRNCISDNVAITTPYRDTSRYGMGSETPMHP
SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPASWSASPQY
QPGSPPSRAYEAPTPGSGWANTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQPMTPN
SASYLPGTPGGQPMTPGTGGLDMMSPVIGGDSEGPWFMPDILVNVRNSGEETTGVVREVL
PDGSCRVVIGSSGNGETITALPNEMEAVVPRKNDKIKIMGGSLRGVTGKLIGVDGTDGIV
KVDDTLDVKILDLAILSKLGQ
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcacagagacgaagatgacgatgagatggacccagaggaagaggacgagtac
gagccagaccaagttatagacgaggatgaagaagaggaagaggaggagcagcgaggagga
cgacgctccagtcagaagcggaggagatcggatttcatcgacgatgctgcagaggaggac
gatgaagaggaggaagaggacgacgaggatgatgagtcttatggtggtggtgcgagtcgt
cagcggaggaataagaggcccagtgggtcgcagtttcttgatatcgaggctgaggtcgat
accgatgatgaggaagatgaagatgaaggcgaggacgacttcattgttgataatggagct
gatctacctgaagacgacgatggtagaaggatgcatcgtcgtccattgctgcctcgagaa
gatgagcaagaagatgttgaagcgcttgagagaagaattcaagcgcggtatgcaaggtcg
agtcatacagaatacgatgaggagaccactgatgtggatcagcaagctcttttaccttct
gttagggatccaaagttgtggatggtgaaatgtgcgattggtcgtgagcgagaggcagct
gtttgtttaatgcaaaagtatattgataaacctgaactgcaaatcaggtctgctgttgct
ctagaccaccttaaaaactttatatacattgaagcggacaaagaagcccatgtgagggag
gcgtgcaaaggtctacgcaatatatttgcccagaagataaatcttgttccaatcagagaa
atgactgacgttctgtcggttgaaagcaaggcaattgatctttctagggatacgtgggtc
agaatgaagattgggacatataaaggagaccttgccaaggttgtggatgtcgataatgtg
cggcagaaagttacagtaaaattaattccaaggattgatttacaagctattgcaaataaa
ctggagggcagagaagttgtgaaaaagaaggcatttgttcctcctccacgttttatgaat
attgatgaagcaagagaactgcatattcgtgtagagcgtagacgagatccgatgactggt
gattactttgagaatattaatggcatgctgtttaaagatggtttcctgtacaaagcagta
tcaatgaaatcgattagctctcaaaacatacatcccacttttgatgaacttgaaaaattt
cggaaacctggggagaatggtgatggagatattgccggtttgtcaactttattttcaaac
agaaagaagggacactttatgaagggtgatacagttattgttatcaagggagatcttaaa
aatttgaaaggatgggttgagaaagttgaagaagagactgtacatatcaggcccgaaatt
aaagaacttccaaaaactcttgccataaacgaaaaagagctttgcaaatactttgaacct
gggaatcatgtgaaagttgtatctggtactcaggaaggttcaactggtatggttgttaag
gttgagcagcatgtgctcatcattttatctgatataacgaaggaacatatccgtgtgttt
gctgatgatgttgtggagagttctgaggtgacatctggtattaccagaattggtgcatat
gagcttcacgatcttgttctactggctaataatagtttcggtgtaatcattcgcgtggaa
agggaagcatttcaggttcttaagggagttcctgacagacctgaggttgcccttgtcaag
ttaggagagatcaagtgcaagattgagaaaagttttcctgttgaagtgaagtataaacac
aaagtatctgtgaaagatgttgtgagggtcattgatggcccttgcgaggggaaacaaggt
cccgtggaacacatatacaggggagtcttgttcatttatgatcgccatcacctagagcat
gcaggctttatctgtgttaagtcccatgcttgtgctcttgtgggaggatcacgtgcgaat
ggtgatagaaatggtgatacccactcaagatatgaccatctcagaactcctcctcgtatt
ccccagtcgccaaagaggttttctagaggaggccctccaaataactatggaggaaggaat
agaggtggacgagggcatgatggcttggttgggactacagtaaaggttcgccagggtgcc
tataagggctatcggggacgtgttgttgaggttaagggaccgaatgtacgggttgaattg
gagtcccaaatgaaggttgttacagttgatcgtaattgtatttctgataatgtggctatt
acaacaccatatcgtgatacatctcgctacggtatgggaagtgagaccccaatgcatcct
tctcgaactccgcttcatccatatatgactcctatgagggatgctggagcaacgcctatt
catgacggcatgaggactcctatgcgtgaccgagcatggaatccgtatgcacctatgagt
ccagcaagggataactgggaggatgggaaccctgcttcttggagtgcgagcccacagtat
cagccaggaagtcctccatcacgagcgtatgaagcaccaactcctggttctggttgggct
aacactcctggtggaaattatagtgaagctggcacaccaagggacagtagttctgcttat
gcaaatgctcctagcccttacttgccatcaactccgggtgggcagcctatgacaccaaac
tcggcatcctatcttcctggaactcctggggggcaaccaatgacaccaggcactggtggt
ctggatatgatgtctcctgttataggtggggacagtgagggaccatggttcatgccagac
atattggtcaatgtacgcaattctggagaggaaactactggagttgtcagagaagtgctc
ccggatggctcctgtagggtagttatagggtcaagtggcaatggggaaactataacggcg
ctgcctaatgaaatggaggcagtcgtaccaaggaaaaatgataagatcaagatcatgggt
ggctcattacgcggtgtcactggtaagctgattggtgtggatggcacagatggaattgtc
aaggtggatgacacccttgatgttaagatattagacttggctattttgtcaaaactaggc
caatag
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integrated database retrieval system
