Prunus persica (peach): 18767136
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Entry
18767136 CDS
T03092
Name
(RefSeq) DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pper
Prunus persica (peach)
Pathway
pper03022
Basal transcription factors
pper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18767136
09124 Replication and repair
03420 Nucleotide excision repair
18767136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18767136
03036 Chromosome and associated proteins [BR:
pper03036
]
18767136
03400 DNA repair and recombination proteins [BR:
pper03400
]
18767136
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
18767136
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18767136
Chromosome and associated proteins [BR:
pper03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
18767136
DNA repair and recombination proteins [BR:
pper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18767136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
SNF2-rel_dom
AAA_11
AAA_19
Motif
Other DBs
NCBI-GeneID:
18767136
NCBI-ProteinID:
XP_007198999
UniProt:
M5VTG6
LinkDB
All DBs
Position
G8:21172908..21177918
Genome browser
AA seq
759 aa
AA seq
DB search
MKFQVEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPQNPVKLIYCTRTVHEMEKTLAELKVLHNYQVKHLGPQAQILAVGLSSRKNLCVNPT
VLAAENRDSVDAACRKLTASWVRALAAENPNVPTCEFLEQYEKAGSGAVLPPGVYTLQDL
RAYGKQRGWCPYFLARHMVQFSNVVVYSYQYMLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLSKMQHEIERFKATDADRLRKEYNRLVEGLAQGGNLPL
TDTWLQNPALPEDILKEAVPGNIRKADHFVHVLRRLVQYLEGRLETENVEKEGPVGFVAS
ISTHAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFLSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSVSGRKTLLSQEDLENMGESIADEMLR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaagtagaagacgtcacagtctacttcccatacgaccacatatacccagag
caatatgcatacatgctcgagctcaagcgagccctggacgctaagggccactgcctcctg
gagatgcccacaggcacgggcaagaccatcgccctcctctccctcatcacaagttacact
ctctccaagccccaaaacccagtcaagcttatctactgcactcgcactgttcacgagatg
gagaagactctcgctgagctcaaggtcctccacaattaccaagttaagcatctgggtccc
caagcacagatcttggctgtggggctttcgtctcggaagaacctctgtgtcaacccaact
gtcttggcagccgaaaatcgagactctgtcgacgcagcctgccggaaattgactgccagc
tgggtgagagccttggccgctgagaacccaaatgtgcctacttgtgagtttttggagcag
tatgagaaagctgggtctggagcggttttgcctcccggggtttataccttgcaggatttg
agggcgtatgggaagcagagagggtggtgtccctacttcttggcaaggcatatggtgcag
ttctccaatgtggtggtttacagttatcagtatatgcttgatcctaaagtggctgggatt
atttccaaggaaatgcagaaggagtctgttgtggtgtttgatgaggcccacaacattgat
aatgtgtgtattgaagcgcttagtgttagtgtgaggaggcagacacttgaaggggccaga
aggaatctcagtaagatgcagcatgaaattgaaaggttcaaggccactgatgcggataga
ttgcgtaaagaatacaaccgacttgttgagggtttggcacaaggaggaaacctacctctc
acagatacttggcttcaaaatcccgctctacctgaagatattctgaaggaggctgtgcct
ggaaatattcgcaaagcagaccattttgtgcatgtgttacgaagattggtccagtatttg
gaagggcgtcttgagactgagaatgttgagaaggaaggccctgttggttttgttgcctct
attagtacacatgctggaattgaccagaaaactctgaagttctgttatgatcgcctacac
tcactcatgatgacgttggaaattactgacacagatgagttcttacacatccaaacaatc
tgtgacttcgcgacacttgtggggacatacactcgcggtttctctattataatcgaacca
tttgatgagagaatgccacatattcctgatcctgttttgcagcttagctgtcatgatgca
tctcttgccataaaacctgtatttgatcgatttcaatcagttgtgattacatctggaacc
ttgagcccgattgatctctacccccgtcttctcaatttccatcctgtcgtcagtcgaagt
tttacaatgtcattaacaagagattgcatctgcccaatggttctcacacgtggaagtgat
cagcttccggtaagtaccaaatttgatatgagaagtgatcttggcgtagtaaggaactac
gggaggctgctgctggagatggtttctgttgtcccagatggggttgtatgtttctttgtc
agttactcttatatggatggaatagtcaatagctggaacgaaaatggaattttaaaggaa
ataatgcagcataagcttgttttcattgagacccaagatgtcgttgaaactactttggct
cttgacaattaccggaaggcttgtgattgtgggagaggtgctgtctttttgtctgttgcc
aggggaaaagtagctgaagggatagactttgatcgacattatggacgattggtgatcatg
tttggtattccttttcagtacacattaagcaagattttgctggcgcggctggaatacttg
cgggatacctttcaaataaaggaaggagattttttgacttttgatgccttgagacaagct
gctcaatgtgtaggccgagtcatccggtcaaaagcagactatggcatgatgatatttgct
gacaaaagatatagccgtcatgacaagagatccaaattgccagggtggatactgtcacat
ttacgtgatgcccacctaaatttgagcacagacatggctctgcatatagcacgagagttc
cttaggaagatggctcaaccatatgataaggctggtagcgtaagtggtaggaaaaccctt
ttgtcccaagaagacttggaaaatatgggcgaaagcatcgctgatgaaatgttgcgttaa
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