Prunus persica (peach): 18769853
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Entry
18769853 CDS
T03092
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pper
Prunus persica (peach)
Pathway
pper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18769853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18769853
03019 Messenger RNA biogenesis [BR:
pper03019
]
18769853
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18769853
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18769853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
18769853
NCBI-ProteinID:
XP_020423627
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All DBs
Position
G7:complement(14191747..14199720)
Genome browser
AA seq
1098 aa
AA seq
DB search
MEMESSRRPFTRSTEPVKKPRLADDRGLNPNPNPNGRAFVQRPGGANPVLSRFRVTDRDS
ESNDASRGGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGESVHAAKAIAAT
VCGNIIEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPNVHQSMRH
LFGTWKGVFPAQTLQMIEKELGFASTANGSSSGAATSRLDSQSQRPAHSIHVNPKYLERQ
RLQQPTRTKGMASDFSGAMANSIDDAERPDRVASLSAGRPWVDPTVKMHNMQRSNTDALS
ERVHEKNIGAEYGEYEYGSDLPRSSNLGIGRIGGKITEQGNDKPWYGGGSSVAETISSQR
NGFNIKHGLTNYSAPKSANADPRLKTAPAIASRSSGVLSNSWKNSEEEEFKWDDMNSRLT
DHGPPDISSNSRKDCWTSDDSEKLGFGGHFRKPKGANDFATTVDLDTSADPTEHNDLSAL
GHRMSSPWPLSDSHGMDGLTPTGTPVISSVHSERYASSLSGLSTSGDSSVARLGSRAQVA
SSRIGASSFGFGATSGPAVAVGKQKQLQSVRAASPSGQSLVHQHSPAPTSTVHHPHHHLQ
SLPEQDYLESPSLPPPDSKVSQLLGKSDLGLHNHYTEDSAPISTPNVRLGSIAKSRPQDL
HSSSSSIKNPSLPQLSTYVTPSTAGISLPDHSNLRAAETSGQSSTSSLLAAVMKTGILSD
KSITGSLPSLNLRDMGQNQSQSGVQPPLPSGPPPTQVALPGSKVASAPSSSHLSHENSPA
SSDISLKKVGHPPLPPSQPLSSSLEGTASANASTVVNNASDPISNLLSSLVAKGLISASK
SESPTPVSSQMPNELQNQSVSTPVTSSVSVSPVSASPSLPVSSRTDDVSLAEPLAKTSAA
LPQSSKIETKNPIGIEFKPDKIREFHPSVIEELFDDLPHKCSICGLRLKLKERLERHLEW
HALKTPEFNGSVKASRRWYADSTNWVAGKAGPPLGPEDNMSIDKPSETMDNGEPMVPADE
SQCVCVICGYIFEDLYCQERDEWMFKGASYLSIPYGVGDLGTTEESVVKGPIVHANCIAE
NSLSDLGLASRIKLEKDV
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcgtaggccgtttaccagatcgactgaaccagtgaagaagccc
cgattggccgacgaccggggcctgaacccgaacccgaacccaaatggtcgagctttcgtg
caaagacccggtggagctaacccagtgctgtcaaggttcagagtgaccgatagagactcg
gagagcaatgacgcgagtcgcggtgggggctatgtgccgcagcctctgcagcatcaggag
cttgtgagccagtacaagacggcgttggcggagctcaccttcaattcaaagcccataatc
actaatttgacgataattgctggggagagcgtccatgcggcgaaggcgattgcggccact
gtatgcggcaacattattgaggtttctagtgagcagaagttaccatcactttatcttttg
gacagtattgtaaagaatattggaagggattacataaaatattttgctgccagactccct
gaggtgttttgcaaggcatataggcaggttgaacctaatgtacatcaaagcatgcgccat
ctttttggaacatggaagggagtatttcctgctcagacacttcagatgatcgagaaagaa
cttgggtttgcttcaacagcaaatggttcatcctctggagctgcaacatcaagactagat
tcccagtcgcaacgaccggcacatagcattcatgtgaatcccaaatatttggaaaggcaa
cgtcttcagcaaccaacaaggacaaaaggaatggccagtgacttttctggggctatggca
aactcaattgatgatgcagagaggccggacagagtagcaagtctcagtgctggacgaccg
tgggttgatcctactgttaaaatgcataatatgcagcgttctaatacagatgcactaagt
gagcgtgttcatgagaagaacatcggcgctgaatatggagaatatgaatatggttctgat
cttccaaggagttcaaacttaggaattggaagaattggtgggaagattacagagcaagga
aatgataaaccttggtatggtggtggcagcagtgttgcagaaacaatatccagtcaaaga
aatggttttaacatcaagcatggacttacaaattactcagcacctaaatctgcaaatgct
gatcctcgcctgaagacagcaccggccattgcaagtcgaagcagcggtgtgctgtctaat
agctggaagaattccgaggaagaggagttcaaatgggatgatatgaactcgaggttaaca
gatcatggtccccccgatatttctagtaactcaagaaaagattgctggacttctgatgat
tcagaaaaattggggtttggaggccactttcgtaaaccaaaaggtgcaaatgactttgca
acaacagttgatctggatacgtctgctgatcctactgaacataatgacctatctgctctt
gggcaccggatgtcatcaccttggccattatcggactctcacggtatggatgggctgacc
cctactggcactcctgtgattagttcagttcattcagagcgttatgcttcaagtttaagt
gggctatcaacaagtggagattcttctgtagctaggctgggaagtcgagcacaggtagcg
tcttctcgtattggagcctcaagtttcgggtttggtgcaacatcagggcctgctgtagct
gtggggaaacagaagcagcttcagtctgtgagagccgcatcaccatctggacagtcactg
gtgcaccagcattctcccgcacctacatcaacagtacatcatcctcatcatcatttgcaa
agtttacctgaacaagactatcttgagtccccgtcccttcctcctcctgattcaaaagta
tctcaacttttgggaaagtcagacttaggattgcataaccactatactgaggactctgcg
cctatctcaactcccaatgtccggctgggtagcatagcaaaatcacggccacaagatttg
cattcttcatcttcgtcaattaagaatccctctttgccacagttgtctacttatgtaact
ccctcaacggctggcatttctttaccagatcattcaaatctccgtgctgcagaaacttca
ggacaatcaagcacaagtagtttgttggctgctgttatgaagaccggaattctttctgac
aaatcaattactggtagcctacccagtttgaatcttcgggacatgggacaaaatcaatca
cagtcaggtgttcagccccccttgccaagtggacctccccctacccaggttgcactccca
gggtccaaggtcgcatcagcaccttcatcaagtcacctgtcccatgagaactcaccagct
tcctcagatatttcactgaagaaggtaggacatccgccacttcctcctagccaacccctc
tcttcttcccttgagggtactgcatcagcaaatgcttcaactgtggtgaataatgcctca
gatccaatttcaaaccttctaagctctttagttgcaaagggtttgatatctgcatcaaag
tcggagtcacccactcctgtgtcatcccaaatgccgaatgaactgcaaaaccagagtgta
tctacacctgtcaccagttcagtgtcagtatctccagtttcagcttctccaagtcttcct
gtttcatctcgaactgatgatgtatctctcgcggaacctcttgctaaaacctctgctgcc
ttacctcaatccagcaagatagaaacaaaaaatcccattggcattgagtttaagccagat
aaaatccgagaattccatccatctgtgatcgaggaactttttgatgaccttcctcataag
tgcagcatatgcggccttaggctcaaacttaaagaacggcttgagagacacttagagtgg
catgctttgaaaactcctgaattcaatggttcagttaaggcatcaaggaggtggtatgca
gattcaaccaattgggttgctggaaaggcaggacctcctttaggacctgaagacaacatg
tcaatagataagcctagcgagacaatggacaatggtgagcccatggttccagccgacgaa
agtcaatgtgtatgtgttatatgtggttatatttttgaagatctttactgtcaagaaagg
gatgaatggatgttcaaaggagcttcatacttgagcattccatatggcgttggtgatttg
ggaactacagaggagagtgttgtgaaaggtcccattgttcatgcaaattgtatagcagaa
aattcactctctgatttgggactggccagccgcattaaattggaaaaggatgtctag
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