Prunus persica (peach): 18772014
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Entry
18772014 CDS
T03092
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18772014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pper03041
]
18772014
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18772014
Spliceosome [BR:
pper03041
]
Complex C
Other components
Step II factors
18772014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_19
AAA_22
ResIII
IBR_1
zf-RING_UBOX
HA2_N
zf-C3HC4
IBR_2
Helicase_RecD
ABC_tran
AAA_30
RsgA_GTPase
Herpes_ori_bp
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18772014
NCBI-ProteinID:
XP_007208142
UniProt:
M5W7P8
LinkDB
All DBs
Position
G6:20109801..20117049
Genome browser
AA seq
1724 aa
AA seq
DB search
MRSSCGPYPRATFRQPQPPEIPHRYPPRQPNYRPDGCCRRPPPRPPSFIVVLLSDQRNRR
TADIDAVIAKCKFKPENVEFSPSNVIVVSLFYTQWVHALEAIVCLWESRLDRVHNLTPKL
NRFVSVPSDLEELQDRLRGLFTERIKKLIDGEAVKKWEEKRAQLSKEFDRVSKLLLRPSP
VWTLDDLAQKKRRSKCEMELVESKIREFKSAMNCLLAYLDGNELEGCGEEGVQVFKFSRE
VYDWGRIQSIMARECHRLEEGLPIYAYRQQILQQILTQQVLVLIGETGSGKSTQLVQFLA
DSGIAAEQSIVCTQPRKIAATSLAERVTQESSGCYREKSIKFNPTFLSGQELNSKVIFMT
DHCLLQHYMNDMNMSGISCIIIDEAHERSLNTDLLLALIKGLLGRRPSLRLVIMSATADA
EVLSNYYYGCGIFSVVGRSFPVDVRYKPSFSEGTSSDATSYVSDVLRVATEVHKKEKEGT
ILAFLTSQMEVEWACQKFIAPGAIALPLHGKQTFEDQYNVFQSYPGRRKIIFATNLAETS
LTIPGVKYVIDSGMAKESKFEPASGMNVLRVCRISRSSANQRSGRAGRTEPGICYRLYSK
NDFEAMPPCQEPEIRRVHLGVAVLKILALGIKNLKDFEFIDAPCSEAIDMAMRNLIQLGA
VKQTDDVFELTKDGRFLVKLGVEPRLGKLILGCYNHSLRREGLVLAAVMANSSSIFCRVG
NDEEKLRSDCLKVQFCHRDGDLFTLLSVYKTWDNLAQEKKNTWCWENSINAKTMRRCQEM
VKDLESCLKHELNMIIPSTWCWNPHESNDCDKYLKKVILSSLVENVAMFSGHDQLGYEVA
LSGQHVRLHPSCSLLVFGEKPSWVVFGELLSISNQYLVCVTSIDFNTLSTLCPPPLFDVS
KMESQKLQLKVLTGFGSTLLKRFCGKGNCYLLHLVSRVRSICKDERINIKVDYYQNEITL
FATLHDRDRVSSFVYDALECERKWMRNECLEKCLYHGSGVLPSIALFGAGAEIKHLELQK
RCLTVDVVHSKLDSMDDKELLSELEKYASGSICAIHKFTGTGQESVDKGKSARITFLSPD
VAQKAVELNESEFSGSILKVIPSQVGGDRKMLSFPAVRAKVYWPRRLSRGIAIVKCDVDD
VAYMVNDFFNLLVGGRIVRCETSKRYKDSVVISGLEKDLSEAEILDVLRTATSRRILDFF
LLRGDAVENPPCGACEDALLKEISTFMPKRYSHNSCSIQVFEPEQKNAFMRALITFDGRL
HLEAAKALEQLEGKVLPGFLSWQKMKCQQLFHSSLSCPAPVYPVIKKQLDSLLSSFVQLN
GVEWSLDRNANGSYRVKISANATKTVADLRRRVEELVKGKTIDHASLTPTILQLLFSRDG
IALMHSLQRETGTYILFDRRNVSVQVFGSSDQVGVVQQKLVDSLLTLHENKLIEIRLQGS
ALPPELMKEVINRFGADLHGLKEKVPGADFSLNVRRQVISIHGNKDLKQKVEDNIYEIAQ
MTGSSTERFNSEADCPICLCEIEDEYRLAVCGHLFCRLCLVEQCESAIKNQDSFPMCCAH
EGCRSLIVFSDLRYLLSSEKLEELFRASLGSFIASSGGNYRFCPSPDCSSVYQVAAPGTD
GEPFVCGACYAETCTRCHLEYHPYLSCEQYREFKEDPDSSLKEWCKGKEHVKSCPVCRYT
IEKIDGCNHIECRCGKHICWVCLASYGTSNECYDHLRSVHMAII
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgagatcgtcgtgcggaccataccctcgcgccactttccgccaacctcagccgccggaa
attccccaccgataccctcccaggcaacccaattaccggccggatggctgctgccgtcga
ccccctcccaggcccccgagcttcatcgtcgtgctcctctccgaccaacgtaaccgccgg
acagccgacatcgacgccgtgatcgctaaatgcaagttcaagcccgaaaacgtcgagttc
tctccctctaatgtcatagtggtctccttgttctacacacaatgggtccacgcgctcgag
gccattgtttgtctttgggaatcgcggctcgaccgggttcataatctgacaccgaagttg
aaccggtttgtttctgtgccgtccgatctcgaggagctccaggaccggctcagaggcttg
ttcacggaaagaattaagaaattgattgacggggaagcagtgaagaagtgggaggagaag
cgggcccagttgtctaaggaatttgatcgagtttcgaagttacttctgaggccaagccct
gtttggactctggatgacttagctcagaagaagaggaggagtaaatgcgaaatggaattg
gtggagagtaagattagggagttcaagtcggcaatgaactgtttgcttgcttatcttgat
gggaacgagttggaggggtgtggtgaagaaggcgtgcaagtgtttaaattttcacgtgaa
gtttatgattggggtcgaattcagagcataatggctcgggagtgccacagactcgaagaa
gggttgcccatttacgcttatcggcagcaaattcttcagcaaattcttacccagcaggtc
ctggtgttaattggagaaactggttcaggaaagagtacacagttggtgcagtttcttgcc
gattctggaattgctgctgagcagtctattgtatgcactcagcctcgcaagattgctgcc
acgtcgttggccgaaagggttacacaagaaagtagtgggtgttatagagaaaagtcaata
aaatttaatccgacatttttgtcagggcaggagttgaattctaaggtaatatttatgaca
gaccactgtctactgcagcactacatgaatgatatgaatatgtctgggatttcttgcatc
attattgatgaggctcatgaaaggagcttgaatactgatctccttttggcattgatcaaa
ggtttactaggtcgaagacctagtttacgacttgttataatgtctgcaacagctgatgca
gaagtgctttcaaattattattatggctgtggaatcttttctgtggtggggaggagcttt
cccgttgatgttagatataaaccatctttcagtgaaggaacttctagtgatgctacttcc
tatgtttctgatgtgctgagggtagcaacagaggtacacaaaaaagagaaagaagggaca
attcttgcctttttgacttcccagatggaagtagaatgggcttgtcagaagtttatagca
cctggtgcaattgcactgccactgcatggaaaacaaacttttgaagaccaatataatgtt
ttccaaagctaccctggaagaagaaaaattatatttgccacaaatctggctgagacatct
ctgacaattcctggggtaaagtatgtgattgattctggtatggctaaagaaagcaaattt
gaacctgcaagtggcatgaatgttctaagagtttgcaggatcagccggagttctgctaat
caaagaagtggccgtgctggaagaacggaacctggtatatgttatagactctactcaaaa
aatgattttgaggcgatgcctccttgccaggaacctgagatccgtagagttcaccttggt
gttgcagttctgaagattttggctttgggcatcaagaatttaaaagattttgaatttatt
gatgcaccttgttctgaagctattgacatggccatgcggaaccttattcagttaggagct
gtgaagcaaactgatgatgtttttgaattaactaaggacggtcggttcttggttaaattg
ggtgttgagcctcggcttggtaaattaatccttggttgttataaccacagcttacgtagg
gaaggccttgttcttgcagctgtaatggcaaattccagtagtatattttgtagagttggt
aatgatgaagaaaaacttagatcagactgtcttaaggtgcaattttgccatcgtgatggg
gatctctttacccttctctctgtgtataagacatgggataatttggctcaagagaagaaa
aacacatggtgttgggaaaacagcattaatgccaaaactatgaggagatgccaagaaatg
gtaaaggatttggagtcttgccttaaacatgaactcaatatgataattcctagtacctgg
tgttggaatccacatgaatcaaatgattgtgataaatatttgaaaaaggttatactttct
tcccttgtggaaaatgttgctatgttctcgggacatgatcaacttggttatgaagtggca
ttaagtgggcaacatgttcggttgcatccttcgtgttcattgttagtatttggtgagaaa
cctagttgggtggtatttggtgaactcctgtcaatttctaatcaatatttagtctgcgtc
acttccattgatttcaacactttgtctaccctatgtcctcctcctttgtttgatgtatct
aagatggaaagtcaaaaattgcaactgaaagttttgactggttttggaagtactctgctt
aaaagattttgtgggaagggcaactgttatctgcttcatcttgtttcacgtgttaggtca
atttgcaaggacgaacgtatcaacattaaagtcgattattatcagaatgagattacgttg
tttgccaccttgcatgacagggatagggtttcaagctttgtatatgatgccttggagtgt
gaacgaaaatggatgcgaaatgaatgtttggagaaatgcttgtatcatggttctggtgtc
ttgccctcaatagcattgtttggagctggtgctgagatcaagcatctggagcttcaaaaa
aggtgtttgactgttgatgtagttcattcaaaactagattccatggatgataaggagtta
cttagtgagcttgaaaagtatgcctctggtagtatatgtgctattcataagttcactggc
actgggcaggaaagtgttgataaaggaaagtcggccaggataacatttttaagtcctgat
gtggctcaaaaagctgttgaactaaatgaatctgaatttagtggctccatactgaaggtt
attccttctcaggttgggggtgatcgtaaaatgttgtcgttccctgctgttagagctaaa
gtttattggcctcgtaggctaagcagggggattgcaattgtcaaatgtgacgtggatgat
gttgcttacatggttaatgatttttttaaccttttagtaggaggaagaattgttcgttgt
gaaactagcaaaagatacaaggattctgttgtgatcagtggacttgaaaaagatctttct
gaggctgaaattttggatgtgttgaggactgccacaagtaggagaatcctggattttttt
ctgctgagaggagatgctgtagaaaatccgccatgtggtgcttgtgaagatgctctccta
aaagaaatatcaacctttatgcctaaaaggtactcccacaatagctgcagcattcaggtt
ttcgagcctgaacaaaagaatgctttcatgagagctttgattacatttgatggaagatta
cacttggaggcggcaaaagctttggaacaattagaagggaaagtattgcctgggttcctt
tcatggcaaaagatgaagtgccagcagttatttcatagctctctatcctgccctgcccct
gtttatcctgtgatcaagaagcagttggattcgttactttcaagttttgttcaactaaat
ggtgtagaatggagtttagataggaatgctaatggctcctacagagtgaagatatctgcc
aatgctacaaaaacagttgcagacctcagaagacgtgtggaggagcttgtgaaagggaag
acaatagaccatgccagcctcactccaactattttacagcttctgttctccagagatggc
atcgctctaatgcactcactacagagagagacgggaacctatattctttttgacaggcgt
aacgtcagtgtacaggtcttcggttcttcagaccaagttggtgtggtccagcagaaattg
gttgactcccttttaacactccatgaaaataagctgattgagatccgacttcaaggtagt
gccttacctcccgagttgatgaaagaggttattaacaggtttggggcagacctccatggg
ctcaaagagaaggtaccaggggctgattttagtctaaatgttcgccgtcaagtcatttcc
attcatggaaacaaggatttgaagcagaaagtagaagataatatttatgagattgcacag
atgacaggtagttcgactgagaggtttaatagtgaagctgattgccccatatgtttgtgt
gagattgaagatgaataccggcttgcggtgtgtgggcatttattttgtcgtttgtgtttg
gtggagcagtgcgagtctgcaataaaaaaccaagatagtttcccaatgtgctgtgcacat
gagggttgcaggtctcttattgtgttcagtgatctgagatatctcttatcaagtgagaag
ctggaggagctctttagggcctcattgggatcatttattgcgtcaagtgggggaaactac
aggttttgcccttctcctgactgctcgtctgtgtatcaggtagctgctcctgggacagat
ggtgaaccattcgtatgtggtgcatgttatgccgagacatgtacccggtgccatttagaa
tatcatccatacctgtcgtgcgagcagtaccgggagttcaaggaagatccagattcatca
ttgaaggagtggtgcaaaggaaaagaacatgtgaagagctgcccggtatgcaggtataca
attgagaagatagatgggtgcaaccatatagaatgtaggtgtgggaagcatatttgctgg
gtgtgcttggcgtcttacggaaccagcaatgaatgctatgaccatttgaggagtgttcac
atggccatcatttga
DBGET
integrated database retrieval system
