Prunus persica (peach): 18773349
Help
Entry
18773349 CDS
T03092
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pper
Prunus persica (peach)
Pathway
pper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18773349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18773349
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18773349
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18773349
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18773349
NCBI-ProteinID:
XP_007208733
LinkDB
All DBs
Position
G6:complement(5902822..5910284)
Genome browser
AA seq
633 aa
AA seq
DB search
MSGLLNSSLNGSGSNLPDSSGRFATSFSGQSGAASPVFHHTGTIQGIHTFMEASMSQHAG
TLTSRNSNVKLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGIGGSIPGILPTSAAIGNR
NAVPGLGVSPILGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLASRLNLSANSGSG
SLTVQGQNRLMSSVLPQGSPQVISMLGNSYPNAGGPLSQSHVQVNNLSSMGMLNDVNSND
SSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFK
GGNAEYGMDIHQKEQLHDNTVSMMQSQHFSMGRSTGFNLGGTYSSHRPQQQQQHAPSVSS
SGVSFSQVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSANTVSGMGSYDQLI
QQYQQHQNQSQFRLQQMSAVNQSFRDQGMKSMQTSQSAPDPFGLLGLLSVIRMSDPDLTS
LALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFSVPQCYYAKQPPALHQGYFSK
FSVETLFYIFYSMPKDEAQLYAANELNNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGS
YHCFDPNTFETIRKDNFVLQYEALEKRPVLPQH
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctaaacggatcaggctcaaatcttccagacagtagt
gggcgatttgccacatctttctctggtcagtctggtgccgcttctcctgtttttcatcac
acaggaactattcaggggattcatacattcatggaagcttcaatgtcccaacatgcaggt
acattaacatcaagaaactccaacgttaaattatctcatggaagctcccatggacattcg
ggagtcactaatagagggggtataagtgtagtaggaaaccctggatttagtagtagcaca
aatggaattggcggttctattcctgggattctccctacatctgctgcaattggtaaccgg
aatgctgttccaggattgggtgtctccccaattttgggaaatgcaggtcctcggattacg
agttctatgggaaacatggttggtgggggcaacattgggaggagtatcagctctggtgga
ggcttgtcagtgcctggtctcgcttctcgtctaaatttaagtgcaaatagtggatctgga
agtttaaccgtccaagggcagaatcgcttgatgagtagtgtgctaccacaagggtctcca
caggtaatttcgatgctaggaaattcctatcctaatgctggaggtccactttctcaaagc
cacgtacaagtgaataatttgagctctatgggaatgttgaatgatgtgaattctaatgac
agttctccttttgacatcaatgatttccctcaattaacaagtcgtcctagttctgcagga
gggcctcaagggcaattgggttcactgcgaaaacaaggtcttggtgttagtcctattgtt
caacagaatcaagagttcagcatccaaaatgaagattttccggctttgccgggatttaaa
ggtggtaatgctgaatatgggatggatattcaccagaaagagcaacttcatgacaatact
gtgtcgatgatgcaatctcagcacttctcaatgggaaggtccactggatttaacttgggg
gggacttattcttctcatcgtccccaacagcaacaacaacatgctccatcagtcagcagt
agtggtgtctccttttcgcaagtaaacaatcaggatcttctccatttgcatggttcagac
atattcccatcatcacattcaacgtatcactcacagactagtggacctcctggaattgga
ttaagacctctaaattctgcaaatacagtttctggtatgggttcgtatgaccagcttatc
cagcagtatcaacaacaccaaaatcaatcccagtttcgcctgcagcagatgtcagctgtc
aatcaatcatttagagatcagggaatgaaatcaatgcagacatcgcaatcggctccagac
ccatttggtttgcttgggttgttaagtgtgataaggatgagtgatcctgatctaacatcc
cttgcacttgggattgatttgactacgcttgggttaaacttgaattcaacagaaaatctg
cacaagacttttggttctccatggtctgacgagccagctaagggtgatccagagtttagt
gttccacaatgttattatgctaaacaaccgcctgcactacatcaagggtatttttcaaag
ttttccgtggaaacgttgttttatatcttttacagcatgcccaaagatgaagcgcaacta
tatgctgccaatgaactcaataatagaggctggttttatcacaaggagcatcgtctatgg
ttcataagggtacccaacatggagccactcgtcaagacaaacacgtatgagagaggatct
tatcactgctttgatcctaacacatttgaaacgatccgaaaggataattttgtcttgcag
tacgaggcattggagaagagaccagtcttaccgcagcattga
DBGET
integrated database retrieval system
