Prunus persica (peach): 18773392
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Entry
18773392 CDS
T03092
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18773392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18773392
03041 Spliceosome [BR:
pper03041
]
18773392
03009 Ribosome biogenesis [BR:
pper03009
]
18773392
03016 Transfer RNA biogenesis [BR:
pper03016
]
18773392
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18773392
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18773392
Spliceosome [BR:
pper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18773392
Complex C
U4/U6.U5 tri-SnRNP related factors
18773392
Ribosome biogenesis [BR:
pper03009
]
Eukaryotic type
Pre-60S particles
Helicases
18773392
Transfer RNA biogenesis [BR:
pper03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18773392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18773392
NCBI-ProteinID:
XP_007208112
LinkDB
All DBs
Position
G6:complement(8180519..8188034)
Genome browser
AA seq
1116 aa
AA seq
DB search
MFALINGVFWYFTCFTILSLLFYASYIKVKLFVPKKKKSEIESPTMRRRRLSKNPKKNQI
RALLFFLAQQSLTDDDDASSFSSDFAQQRRIGTVSLEYRSNIGRSNFQSGTRLGRAKARM
EMGSLKRKSEEAAAEAEGASQKQQKKENGFVTLDDEAVACLHDVSYPEGFVVPPSSSASA
GEASEPAKKFNFTLDPFQSEAIKCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREV
AWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQPCHI
VYTDYRPTPLQHYIFPSGGNGLFLVVDEKGKFREDSFQKALNALVPAADGAKKKDSGKWQ
KGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMSKMDLNGDNEKENI
EKVFWYAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIELLFQDGLIKCLF
ATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVD
EKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADRAIPN
LEKQRKDLEQERDSIIIEEEDSVKNYYNLLQQYKSLKKELRDIVLSPKYCLPFLKPGRLV
SIQCARNDGASPSFSVEDPVTWGVVLNFQRVKNVSEDDASKKPEGSDYTVDVLTRCGVSA
DGVAKKTIKIFPLKEPGEPVVVSISISQINTMSRLCMVIPNDLLPLQARENTLKRVLETL
SRFDKEKIPMLDPEEDMKIESSSYRKVSRRIEALENLFDRHEVANSPLIEQKLKVFHMKQ
ELAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSAEEL
TLTELMFNGVFKDIKVEEMVSLLSCFVWQEKLKDATKPREELDLLFSQLQDTARRVAEVQ
LECKVEIDVDSFVSSFRPDIMEALYAWAKGSKFYEIMSVTPVFEGSLIRAIRRLEEVLQQ
LIQAAQSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcattaatcaatggcgttttctggtatttcacatgttttacaattcttagcctg
ttgttttatgcttcatatataaaagtaaaattatttgtcccaaaaaaaaaaaaaagtgaa
attgaaagcccaacaatgagacgacgtcgtcttagtaaaaaccctaaaaaaaaccaaata
cgcgctctcctcttcttcctcgcgcagcagagcctcacagacgacgacgacgcttcttca
ttttcctcagacttcgcgcagcagcgccgtatcggaacggtatccttggagtatcggagt
aatatcggacggtcaaactttcagagcgggacgcgtttgggtagggcaaaagctcgaatg
gaaatgggatcactgaagagaaagtcggaggaagcggcggccgaggcagaaggagcttca
cagaaacaacaaaagaaggagaatggttttgtaaccttggacgacgaagccgtggcgtgc
ttgcatgacgtgtcttaccctgagggttttgtcgttcctccctcttcttctgcttctgct
ggagaagcttcggagcccgccaagaaattcaacttcactctcgacccttttcagtccgaa
gccataaagtgcctggaaaaagccgagtcagtcatggtgtctgctcatacatcggctgga
aaaactgttgtggcatcgtatgccattgcaatgtctttaagaaataagcaacgggtgata
tacacttcaccaatcaaagctctgagcaaccaaaagtatagagagttcaaagaggagttt
tcagatgttgggttgatgactggggacgtaacaatagaccccaacgcttcctgcttggtt
atgaccacagaaatctggcgtagcatgcagtacaaagggtcagaggtgacacgggaagtg
gcttggatcatctttgatgaggtacattacatgcgtgatcgggagagaggtgtggtgtgg
gaagagagcattgttatggctccaaagaatgcacggtttgttttcctctcagcaaccgtg
ccaaatgctaaggaatttgctgattggctcgcaaagattcaccgtcagccttgtcacatt
gtctataccgattataggccaactcctctgcagcattatatttttccttctggagggaac
ggtttgttcttagtagttgatgaaaaagggaaatttcgtgaggacagctttcaaaaagct
ctaaatgctcttgtccctgctgcggatggtgctaagaagaaggatagtggaaagtggcag
aagggtttgatcatgggcaaggctgctgaggaaagtgatatcttcaagatggtgaaaatg
ataattcaacgacagtatgatcctgtcatacttttcagctttagcaaaagggagtgcgaa
tctcttgcaatgcagatgtcaaaaatggatctaaatggggacaatgagaaagaaaacata
gaaaaggtcttctggtatgctatggatatgctttcggatgacgataagaagttaccccag
gtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcattccggcttgctt
cccattctgaaggaagtgattgaacttttatttcaggatggtctgatcaagtgtttattt
gccacagagaccttcagcataggattgaacatgcctgcaaaaactgttgtgtttaccaat
gtccggaaatttgatggtgataagttcagatggctgtccagtggagagtatatacaaatg
agcggccgtgctggtcgccgtggtattgatgaacgtgggatatgcatactcatggtagac
gagaagcttgaaccatctactgctaagatgatgctcaaaggaagtgctgattgtttgaac
agtgcttttcatttgagctacaacatgcttctgaatcaattacgcagcgaagatggtaat
ccagaaaatttgcttcgtaactcattctatcagtttcaagctgatcgtgccatccccaat
cttgagaaacaaagaaaggaccttgagcaagagagggattcaattataattgaagaagaa
gatagtgtaaagaattattacaatctattacagcaatacaagagtttgaaaaaagaactt
cgtgatattgtgctttctccaaagtactgcttaccatttctgaaacctggtaggcttgtg
tcaatccaatgtgctaggaatgatggagcttccccctctttttccgttgaagaccctgtc
acatggggagtggtacttaattttcaacgggtgaaaaatgtttccgaagacgatgcaagt
aaaaaacctgaaggttcagactacacagtggatgtcctgacaagatgtggggtgagtgca
gatggagttgcaaagaaaaccatcaaaatttttcctctaaaagagccaggagaacctgtt
gttgtttccatttccatatctcagataaatactatgagtagactttgtatggtcattcca
aatgatcttttgcctctacaagcccgagaaaacacactgaagagagttcttgaaactctt
tcaagatttgataaagaaaagattcctatgctagatccagaagaagatatgaagattgaa
agtagttcatacaggaaggtgtctcgtaggattgaggctttagagaacctctttgacagg
catgaagtagcaaattctccacttatagaacaaaagcttaaggtttttcacatgaagcaa
gaattggctgccaagataaagtcgatcaagaaaacaatgcgctcttccactgcgttggct
tttaaggatgaacttaaggcaagaaagcgggttcttcggaggctaggatatgttacaagt
gatgatgttgtggagttgaagggtaaagttgcctgtgaaatcagtagtgcagaggagttg
accttgactgagctcatgttcaatggggtttttaaggacataaaggtggaagagatggtg
tctcttctctcatgttttgtgtggcaggagaaacttaaggatgctacaaaaccaagggaa
gaacttgacctgctcttttctcagttacaagatacagctcggagggttgctgaggttcag
cttgagtgcaaggtcgaaattgatgttgacagctttgtgagttcatttcggcctgatatt
atggaggcattgtatgcttgggcgaaagggtccaaattctacgagatcatgtcagttaca
cctgtttttgagggaagcttgatcagggctattaggagattagaggaagttcttcagcaa
cttatacaagcagcccagtctattggagaaactgagctcgagtcaaaatttgaggaggct
gtttcgaaaatcaagagggacattgtctttgcagcttccctatacctataa
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integrated database retrieval system
