Prunus persica (peach): 18776266
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Entry
18776266 CDS
T03092
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18776266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pper03041
]
18776266
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18776266
Spliceosome [BR:
pper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18776266
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
T2SSE
AAA_30
nSTAND3
AAA_16
Cas3-like_C_2
SRP54
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18776266
NCBI-ProteinID:
XP_020419721
LinkDB
All DBs
Position
G5:16232997..16242705
Genome browser
AA seq
1049 aa
AA seq
DB search
MGSESNLKTWVSDKLMTFLGYSQPTVVQYIIGLTKQAKSPADVVGKLVEFGLSSSAETSA
FAEDIFARVPRKESGLNLYQKQEREAAMLVKKQKTYSLLDADDQDDDDGDRSSVQVVSES
RKADSHKKRFRKKVLSQEDEDDEVIAQEKEERRVKRRISPDDNDGSESEEERLRDQRERE
QLEQNIRERDTAATRKLTERKLTRKEEEEAIRRSNALERNDLEDLRKVSRQEYLKKREQK
KLEEIRDDIEDEQYLFDGVKLTEVEYRELSYKKQIYELVKKRSDEVEDTTEYRMPDAYDE
EGGVNQEKRFSVAVQRYRDLSAGDKMNPFAEQEAWEDHQIGKATLKFGSKNKKQISDEYQ
FVFEDQIDFIKASVMDGDEFDDDGQPSELLESKAKTALEKLQDDRKTLPIYTYRDQLLEA
VENHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSQEMGVK
LGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDIL
FGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYL
DAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLP
TELQAKIFEATPDGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVT
PISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTVPEVQRTNLANVVLTLKSLGI
HDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGRRMAEFPLDPMLSKMIVASD
KYKCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKET
NFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNLSDYETIKKAITSGFFPHS
AKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVE
IAPHYYQLKDVEDLMSKKMPRGEGRAQQD
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgagagcaatctgaagacatgggtatccgataagttgatgacgtttctcgga
tattctcagcccactgttgttcagtacattattggattaaccaaacaagcaaaatcaccg
gctgatgtggtgggcaagcttgtagaatttgggttgtcctcttcggccgaaacaagtgca
tttgctgaagacatcttcgcaagagtgccccgtaaagaatctggtttgaatctatatcag
aaacaagagagggaagctgcgatgttggtgaagaagcagaagacatattctctcttggat
gcagatgaccaagatgacgatgatggcgatagatcttctgtccaggttgtttctgagtcc
aggaaagctgactcccataagaaacgtttcaggaagaaggtcttgagtcaagaagatgaa
gatgatgaggtgattgcacaagagaaagaagagagacgagttaaaagacgaatttcccca
gatgacaatgatggttcagagtcagaagaagaaagattgcgtgatcaaagagagagggag
caattggagcagaatataagggaacgggatacagcagctacacgaaagttaacagagaga
aaattaacacgaaaggaagaagaggaggctattcggagaagcaatgcattggagcggaat
gaccttgaagatttaagaaaagtttcaagacaagaatatctcaagaagagggagcaaaag
aaattggaggaaatcagagatgatatagaggatgagcaatacttatttgatggtgtgaag
ctcactgaagtagaatatcgcgaactaagttacaagaaacaaatatacgagctggtgaag
aagaggtcagatgaggttgaggataccactgagtacaggatgccagatgcgtacgatgag
gagggtggtgttaatcaggaaaagagattttctgtcgctgtgcaacgctacagggacctc
agtgctggggataaaatgaacccatttgcagaacaggaagcttgggaggatcatcaaatt
ggaaaagcaacgctgaaatttggttcaaaaaataagaaacaaatatctgatgagtatcaa
tttgtatttgaggatcagattgattttatcaaggcatcagtgatggatggtgatgagttt
gatgatgacgggcaaccctctgagttacttgagtcgaaggcgaaaacggccttagagaag
ctccaggatgacagaaaaacattacccatctacacctaccgcgatcaattgcttgaagct
gttgaaaatcatcaggttcttgttattgttggtgaaactggttctggaaaaaccacacag
ataccccaatatcttcatgaggctggatacacaaagcgtggaaagattgggtgcacacag
ccacgacgagttgctgctatgagtgttgctgcaagggtttctcaagaaatgggggtcaaa
cttgggcacgaggttggttattctattcgttttgaggattgcacatccgaaaagactgtt
ttgaaatatatgacagatggaatgctgttgcgagagttccttggtgaaccagatctggcg
agttacagtgtggtgatggtggacgaggcccatgaacgaacactctcgactgatattcta
tttggactagtaaaggatattgctcgatttagaccggatctcaaactgcttatctcaagt
gcaacgcttgatgctgagaagttcagtgattattttgattctgctccaattttcaaaatt
ccagggaggcggtatcctgttgaaatacattatacgaaagcaccagaagctgattactta
gatgcagcaattgtcactgcacttcaaatccatgtgacacaaccacctggagatatattg
gtgttccttactggtcaggaagagattgaaacagcagaagaaatattgaagcacagaaca
aggggtctagggacaaaaattgctgagctgattatttgtcccatatatgcaaacctacct
actgagctgcaagcaaaaatttttgaagccacacctgatggggcaaggaaggttgtcctt
gccacaaatatagctgaaacttcgttgaccattgatgggatcaaatatgttattgaccct
gggttttgcaagatgaagtcgtataacccaaggactggaatggagtcattgctagttact
cccatctcaaaggcatctgcaatgcagagggcaggtcgatctggtcgaactggtcctgga
aagtgcttccggttatatactgcctacaattattacaatgatttagatgataacacagta
ccagaagtacaaagaactaatcttgcaaatgttgtgcttacgttgaagagccttggtatt
catgacttattacactttgattttatggaccctcctccatctgaagcattactaaaagcc
ctggaactgttgtttgcactaagtgcattaaataaagtgggtgagttgactaaagtcggt
agaaggatggcggagtttcctcttgatcccatgctatctaagatgatagttgcttctgat
aagtacaagtgttcagatgaggtcatttccattgctgccatgctttccattggtaattcc
atcttttaccgtcccaaggacaaacaagttcatgctgacaatgcacgtttgaattttcac
accgggaacgtgggagatcacattgcattgctcaaggtgtataactcatggaaagagacc
aacttctcaacccagtggtgctatgaaaactatatacaggtgaggagcatgaagcgtgct
agagatattagagaccagcttgagggactcttggagagggttgagattgagctggtctca
aatctcagtgattatgagaccataaagaaggccattacatctggcttcttccctcattct
gcaaagcttcaaaagaatggatcttatagaacagtcaaacatccacagaccgtccatata
catcccagctcagggctatcacaggtgcttccgagatgggttatataccatgaattggta
cttacaaccaaggaatatatgagacaggtaacagaattaaagccggagtggttagtggaa
atagctccgcattattaccagctgaaggatgttgaagatttgatgtcaaagaaaatgccc
cgtggagaagggcgtgcacaacaggattga
DBGET
integrated database retrieval system
