Prunus persica (peach): 18777386
Help
Entry
18777386 CDS
T03092
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pper
Prunus persica (peach)
Pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18777386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18777386
03041 Spliceosome [BR:
pper03041
]
18777386
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18777386
Spliceosome [BR:
pper03041
]
Complex B
Other components
Prp19-related factors
18777386
Complex C
18777386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
18777386
NCBI-ProteinID:
XP_007210384
UniProt:
M5WQJ0
LinkDB
All DBs
Position
G5:complement(1412012..1415093)
Genome browser
AA seq
921 aa
AA seq
DB search
MSISQELYPSQDDLLYEEELLRNPFSLKVWWRYLIARSESPFKKRFIIYERALKALPGSY
KLWSAYLHERLELVRNLPITHFQYETLNNTFERALVTMHKMPKIWIRYLQTLTEQKLFTR
TRRTFDRALCALPVTQHDGIWDPYLEFVSRKGIPIETSLRLYRRYLKYDPTHIEKFIEFL
INSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLAKHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYVGFEDSML
IHKMETADLSDEEEEEENGVEEDGNEEEVDLRLDVNLSVAELEKEMLNGFWLHDDKDVDL
RLARLEHLMDRSPILANSVLLRQNPHNVEQWHQRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDYLASLWCEWAEMELRHKNF
KGALELMRLATAEPSVEVKRRVAADGNQPVQMKLQKSLRMWTFYVDLEESLGKLESTRAV
YERIMDLKIATPQIIINYALLLEKHKYFEDAFKVYEKGTKIFKYPHVKDIWVTYLSKFVK
RYGKKELERARQLFEDAVQAAPADAKKPLYLQFANLEEDYGLAKRAMKIYDEATKAVPNH
DKLSMYEMYIARAAEIFGIPKTREIYEQAIKSGLPDKDVKTMCLKYTELEKSLGEIDRAR
GVYIFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLQIKRSVSASYSQTHFILPEYM
MQKDQRLNIDEAKHKLKQAGVPEDEMAALERQLAPVAKDTTTKDSNRKVGFVSAGVESQM
DKEIKVTAIHEEIKLLEESDSEDDEMVEIALKEVPSAVFGELANKRKEAEKDEGGDVAAA
TKDGDTHLGALERIKRLKRGG
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatctctcaagagctttacccatcccaagacgaccttctttacgaagaagagctt
ctccgaaacccctttagcctgaaggtatggtggcgttacctaatcgctcgatccgaatct
ccattcaagaagcgttttataatctacgagcgagcactcaaggcccttcctgggagctac
aagctttggtccgcttaccttcacgaacgcctcgagctcgttcgcaatttacccatcact
cacttccagtatgaaaccctcaacaacacttttgaaagagccctggttactatgcacaaa
atgcccaaaatttggattcggtacttgcaaactttgacggagcagaagttgttcactcgg
actcgccggaccttcgacagagcgctgtgtgctcttccagtgacgcagcacgacggcatt
tgggacccgtacctggagttcgtgagccgaaagggtattccaattgagacctcgcttcgg
ctttatcgcaggtatttgaaatatgaccctacccatattgaaaaattcattgagttcttg
ataaattctagtctttggcaagaggctgccgagaggctggcttcagtgttgaatgatgac
cagttctattcgataaaggggaaaacgaaacataggctgtggttggaattgtgtgatttg
cttgctaagcacgctaaggaggtgtcaggcctcaatgtagatgctattattagaggtggg
attaggaaatttacagacgaggtgggacggttgtggacctcacttgctgactattacatt
aggaggaatttgcacgagaaagctagggatatatttgaggagggtatgactactgtggta
acggtaagagattttagtgtaattttcgattcgtatgttgggtttgaagatagcatgctt
atccataagatggagactgcggatttgagtgatgaagaggaggaagaagaaaatggggta
gaagaggatggaaatgaggaggaagttgatcttcgattggatgttaacttgtctgtggct
gagcttgagaaggaaatgcttaatgggttttggttacatgatgataaggacgtagatttg
aggttggctcgattggagcatcttatggatagaagtcctatactggctaatagtgttctt
ttacgacaaaatccccataatgtagagcagtggcaccaaagagtgaagctctttgagggt
aatcccacaaagcagatacttacttacacagaggctgtgaggacggttgatccaatgaaa
gcagtgggaaagcctcatacgttgtgggttgcgtttgctaagttgtacgagaatcacaaa
gatattgcaaatgcaagagtgatttttgataaagcagttcaggtgaactacaagacagtg
gattatttggctagtctttggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactaatgaggctggccaccgcagagccatccgttgaggtgaaacgc
agagtggcggctgatggtaaccaaccggttcagatgaagctgcaaaagtccttgagaatg
tggactttttacgtggatttagaggagagccttggtaaattggagtccacccgggctgtt
tatgagaggataatggatttgaagatagccacaccacaaatcataatcaattatgcattg
cttctggagaagcataaatactttgaagatgcgttcaaggtgtatgaaaaaggtaccaaa
atatttaagtacccacatgtcaaagacatatgggttacatatctctctaaatttgtaaag
agatatgggaagaaagaactggaacgtgcaagacagctatttgaggatgctgttcaagca
gcgcctgctgatgcaaagaaacctttgtatcttcaatttgcaaatctggaggaggattat
ggtctagcaaagcgcgctatgaagatctatgatgaagcaactaaggctgttccaaaccat
gataaattgagcatgtatgaaatgtacattgcccgtgctgcagaaatatttggcatcccc
aaaacaagggaaatatatgagcaagcaataaaatccggtcttccagacaaagatgtgaag
acaatgtgtttgaagtatactgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtatatatatttgcatcacagttttcggatccacgatctgatgtagatttctggaac
aaatggcatgagtttgaggtgcaacatggaaatgaagataccttccgagagatgcttcaa
attaagcgaagtgtttctgcaagctatagccagacacactttattctacccgagtatatg
atgcaaaaggatcagaggttgaacattgatgaggcaaaacacaagttgaaacaggctgga
gtccctgaagatgaaatggctgctttagagaggcagttggcacctgtggctaaagacact
accaccaaagatagtaacagaaaagtgggctttgtgagtgctggagtagaatcacagatg
gacaaagagatcaaagttactgcaattcatgaagaaattaagctactggaagaaagtgat
tcagaagatgatgaaatggttgaaattgcactaaaggaggtcccatctgctgtttttgga
gagttggctaacaagagaaaggaggctgaaaaagatgagggtggagatgttgctgctgcg
accaaggatggtgacacccaccttggcgcccttgagagaataaagaggctaaaacgaggc
ggttga
DBGET
integrated database retrieval system