KEGG   Prunus persica (peach): 18777386
Entry
18777386          CDS       T03092                                 
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
pper  Prunus persica (peach)
Pathway
pper03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pper00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18777386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pper03019]
    18777386
   03041 Spliceosome [BR:pper03041]
    18777386
Messenger RNA biogenesis [BR:pper03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     18777386
Spliceosome [BR:pper03041]
 Complex B
  Other components
   Prp19-related factors
    18777386
 Complex C
    18777386
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_15 Mad3_BUB1_I TPR_19 NRDE-2
Other DBs
NCBI-GeneID: 18777386
NCBI-ProteinID: XP_007210384
UniProt: M5WQJ0
LinkDB
Position
G5:complement(1412012..1415093)
AA seq 921 aa
MSISQELYPSQDDLLYEEELLRNPFSLKVWWRYLIARSESPFKKRFIIYERALKALPGSY
KLWSAYLHERLELVRNLPITHFQYETLNNTFERALVTMHKMPKIWIRYLQTLTEQKLFTR
TRRTFDRALCALPVTQHDGIWDPYLEFVSRKGIPIETSLRLYRRYLKYDPTHIEKFIEFL
INSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLAKHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYVGFEDSML
IHKMETADLSDEEEEEENGVEEDGNEEEVDLRLDVNLSVAELEKEMLNGFWLHDDKDVDL
RLARLEHLMDRSPILANSVLLRQNPHNVEQWHQRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDYLASLWCEWAEMELRHKNF
KGALELMRLATAEPSVEVKRRVAADGNQPVQMKLQKSLRMWTFYVDLEESLGKLESTRAV
YERIMDLKIATPQIIINYALLLEKHKYFEDAFKVYEKGTKIFKYPHVKDIWVTYLSKFVK
RYGKKELERARQLFEDAVQAAPADAKKPLYLQFANLEEDYGLAKRAMKIYDEATKAVPNH
DKLSMYEMYIARAAEIFGIPKTREIYEQAIKSGLPDKDVKTMCLKYTELEKSLGEIDRAR
GVYIFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLQIKRSVSASYSQTHFILPEYM
MQKDQRLNIDEAKHKLKQAGVPEDEMAALERQLAPVAKDTTTKDSNRKVGFVSAGVESQM
DKEIKVTAIHEEIKLLEESDSEDDEMVEIALKEVPSAVFGELANKRKEAEKDEGGDVAAA
TKDGDTHLGALERIKRLKRGG
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgtcgatctctcaagagctttacccatcccaagacgaccttctttacgaagaagagctt
ctccgaaacccctttagcctgaaggtatggtggcgttacctaatcgctcgatccgaatct
ccattcaagaagcgttttataatctacgagcgagcactcaaggcccttcctgggagctac
aagctttggtccgcttaccttcacgaacgcctcgagctcgttcgcaatttacccatcact
cacttccagtatgaaaccctcaacaacacttttgaaagagccctggttactatgcacaaa
atgcccaaaatttggattcggtacttgcaaactttgacggagcagaagttgttcactcgg
actcgccggaccttcgacagagcgctgtgtgctcttccagtgacgcagcacgacggcatt
tgggacccgtacctggagttcgtgagccgaaagggtattccaattgagacctcgcttcgg
ctttatcgcaggtatttgaaatatgaccctacccatattgaaaaattcattgagttcttg
ataaattctagtctttggcaagaggctgccgagaggctggcttcagtgttgaatgatgac
cagttctattcgataaaggggaaaacgaaacataggctgtggttggaattgtgtgatttg
cttgctaagcacgctaaggaggtgtcaggcctcaatgtagatgctattattagaggtggg
attaggaaatttacagacgaggtgggacggttgtggacctcacttgctgactattacatt
aggaggaatttgcacgagaaagctagggatatatttgaggagggtatgactactgtggta
acggtaagagattttagtgtaattttcgattcgtatgttgggtttgaagatagcatgctt
atccataagatggagactgcggatttgagtgatgaagaggaggaagaagaaaatggggta
gaagaggatggaaatgaggaggaagttgatcttcgattggatgttaacttgtctgtggct
gagcttgagaaggaaatgcttaatgggttttggttacatgatgataaggacgtagatttg
aggttggctcgattggagcatcttatggatagaagtcctatactggctaatagtgttctt
ttacgacaaaatccccataatgtagagcagtggcaccaaagagtgaagctctttgagggt
aatcccacaaagcagatacttacttacacagaggctgtgaggacggttgatccaatgaaa
gcagtgggaaagcctcatacgttgtgggttgcgtttgctaagttgtacgagaatcacaaa
gatattgcaaatgcaagagtgatttttgataaagcagttcaggtgaactacaagacagtg
gattatttggctagtctttggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactaatgaggctggccaccgcagagccatccgttgaggtgaaacgc
agagtggcggctgatggtaaccaaccggttcagatgaagctgcaaaagtccttgagaatg
tggactttttacgtggatttagaggagagccttggtaaattggagtccacccgggctgtt
tatgagaggataatggatttgaagatagccacaccacaaatcataatcaattatgcattg
cttctggagaagcataaatactttgaagatgcgttcaaggtgtatgaaaaaggtaccaaa
atatttaagtacccacatgtcaaagacatatgggttacatatctctctaaatttgtaaag
agatatgggaagaaagaactggaacgtgcaagacagctatttgaggatgctgttcaagca
gcgcctgctgatgcaaagaaacctttgtatcttcaatttgcaaatctggaggaggattat
ggtctagcaaagcgcgctatgaagatctatgatgaagcaactaaggctgttccaaaccat
gataaattgagcatgtatgaaatgtacattgcccgtgctgcagaaatatttggcatcccc
aaaacaagggaaatatatgagcaagcaataaaatccggtcttccagacaaagatgtgaag
acaatgtgtttgaagtatactgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtatatatatttgcatcacagttttcggatccacgatctgatgtagatttctggaac
aaatggcatgagtttgaggtgcaacatggaaatgaagataccttccgagagatgcttcaa
attaagcgaagtgtttctgcaagctatagccagacacactttattctacccgagtatatg
atgcaaaaggatcagaggttgaacattgatgaggcaaaacacaagttgaaacaggctgga
gtccctgaagatgaaatggctgctttagagaggcagttggcacctgtggctaaagacact
accaccaaagatagtaacagaaaagtgggctttgtgagtgctggagtagaatcacagatg
gacaaagagatcaaagttactgcaattcatgaagaaattaagctactggaagaaagtgat
tcagaagatgatgaaatggttgaaattgcactaaaggaggtcccatctgctgtttttgga
gagttggctaacaagagaaaggaggctgaaaaagatgagggtggagatgttgctgctgcg
accaaggatggtgacacccaccttggcgcccttgagagaataaagaggctaaaacgaggc
ggttga

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