Prunus persica (peach): 18778527
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Entry
18778527 CDS
T03092
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pper
Prunus persica (peach)
Pathway
pper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18778527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18778527
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18778527
mRNA degradation factors
5'-3' decay
Decapping complex
18778527
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18778527
NCBI-ProteinID:
XP_007213985
LinkDB
All DBs
Position
G4:7843613..7852747
Genome browser
AA seq
827 aa
AA seq
DB search
MEGFESRGSVQEATCSVPQDLNQLQLNTSGDAVFDASQYAFFGKDSVEEVELGGLDEEEA
PVGFDEEEFLYDREQGDVSLSDIDDLSLTFEKLNKDVSGTRRAGVIGDRGSRESSSAAEW
AQEHFPNWIDEDILDAESLQDGKRWSSQPFSSSARPTESLALYRTSSYPEPQQQQQQQQP
HHHQHFSSEPILVPKSGFTSYPPPGGISQQASPNRQSSHLNPYLAGGPQGGLSSPNHSPY
SNSQLQMTGLPHGSHFGGNLPQLTSGISANSRPLKQWANQSGAYGDHPSLLNNLLQQQLS
HQNGLMPPQLMHQPQPQPQPPRLHHPVQPSFNQLSVMQSQLFNPHLSPSPPLMSKFEAML
GMGDPRDQRPKSAQKVRLNMRFSQYGFDTSSHRSDGGWPQFRSKYMTADEIESILRMQLA
ATHSNDPYVDDYYHQYCLARKSAGSKLKHHFCPTNLRDLPPRARANTEPHAFLQVDALGR
VPFSSIRRPRPLLEVEPPNSSSPGNTEQKVSEKPLEQEPMLAARVTIEDGLCLLLDVDDI
DRFLQFNQLQDGGIQLKRRRQALLEGLATSLQLVDPLGNNGHTVGPVPKDDLVFLRLVSL
PKGRKLLAKYLQLLFPGGELMRIVCMAIFRHLRFLFGTLPSDSRTAEISNILARVVSSCV
RGMDLGALSACLAAVVCSSEQPPLRPLGSPAGDGASLILNSVLERATELLTDPHAASNYN
VTNRALWQASFDEFFGLLTKYCVNKYDSIMQSRLMEAPPNVPVIGADTAISFSREMPVEL
LRASLPHTDEHQRQMLLDFTQRSMPIGASNSRDGGNGTHMNSESVLS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtttgagagtaggggtagtgttcaagaggctacctgctccgtccctcaagat
ctcaaccaattgcaacttaatacctcaggagatgcggtatttgatgcatcacaatatgca
ttttttggtaaagattctgttgaggaagttgagttgggaggtttagatgaagaggaggct
ccagttgggtttgatgaggaggagtttctatatgatagagaacagggtgacgtatctcta
tctgatattgatgatctgtccttaacctttgagaagttaaacaaagatgttagtggaaca
aggcgtgctggagtaattggggatagaggatccagagaaagttcatctgctgctgaatgg
gcacaggaacatttccctaactggattgatgaagatatattggatgctgaaagccttcag
gatgggaaacgatggtcttcacaaccgttttcttcttctgcacgtcccacagaatcattg
gctttgtacagaacttcttcatatcctgagccccaacagcagcagcagcagcagcagccg
catcatcatcaacatttttccagtgaaccaattctggtgccaaaatctggtttcacttca
tatcctcccccaggtggcatctctcagcaggcttcgccaaaccgccaatcaagccacctg
aacccatatcttgctggtggaccccaggggggattatcttcaccaaaccactctccttac
tctaactctcaacttcaaatgactggattacctcatggatcacattttggtggaaatttg
cctcagcttacttctggtatctccgctaatagccgacccctaaagcaatgggccaaccaa
agtggcgcatatggagatcatcccagtcttttaaacaatttattgcaacaacagttatct
catcagaatggcctaatgcctccacaattgatgcatcagccacagccacagccacaacct
cctagactgcaccatccagttcagccatcatttaaccagttgtcagtgatgcagtctcaa
ctatttaacccccatctttctccatccccgcccttgatgagcaagtttgaagcaatgctc
ggtatgggtgatcctcgagatcaaaggccaaaatcagctcagaaagttagactaaatatg
cgtttttctcaatatggctttgatacaagtagccataggagtgatggtgggtggccacaa
tttaggtccaagtatatgacagctgatgaaattgagagtatactccgaatgcagctagct
gctacacacagcaatgacccatatgtggatgattattaccaccagtattgccttgcaaga
aaatctgctgggtcaaagttgaaacatcatttctgcccaactaacttaagggatcttcct
cctcgagcacgagctaatactgagccacatgcttttctccaggtagatgctcttgggagg
gttcccttctcttcaatacgcaggcctcgccctcttcttgaagttgagcctccaaattca
tctagtcctggcaacactgaacaaaaggtttctgagaagccactagagcaggagccaatg
cttgctgctagagttacaattgaggatgggctatgtcttctcctagatgtggatgacatt
gatcgctttctacagttcaatcaactccaagatggtggaatacagttgaagcgtaggcgg
caggccttgttggaagggcttgcaacatctcttcaattggttgacccacttggcaacaat
ggccacacagttgggcctgtccctaaggatgatcttgtattcctaaggttagtttctctt
cccaagggccggaagctcctagcaaagtacctgcagcttctttttccaggtggtgagctc
atgcgaatagtctgtatggccatctttcgtcatctgaggttcctgtttggtaccctccct
tctgattcacggactgcagaaatttcaaatatccttgcaagggttgtttcatcatgtgtt
cgaggtatggaccttggtgcacttagtgcctgtcttgcagcagtggtttgttcctcagag
caacccccgcttcgcccccttggaagccccgcaggagatggggcctctcttattctcaat
tcagttcttgagagggcaactgaactcttaactgatcctcatgctgcaagcaactacaac
gtgaccaatcgggcactttggcaggcctcctttgatgaattctttggccttctgacaaag
tattgtgtaaataaatatgatagtataatgcagtcacggctaatggaggcccctccaaat
gtgcctgttattggtgcagatacagccatatcttttagtcgtgaaatgccagttgagctg
ttgcgtgcaagccttcctcacactgatgagcaccagagacagatgttgttggatttcaca
cagcggtctatgcccataggagcatctaacagtcgtgatggaggaaatggtactcacatg
aattctgagtctgtgctgagttga
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