Prunus persica (peach): 18779372
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Entry
18779372 CDS
T03092
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pper
Prunus persica (peach)
Pathway
pper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18779372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18779372
03019 Messenger RNA biogenesis [BR:
pper03019
]
18779372
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18779372
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18779372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
18779372
NCBI-ProteinID:
XP_020417206
LinkDB
All DBs
Position
G4:1167308..1173829
Genome browser
AA seq
1017 aa
AA seq
DB search
MASEKLLLSRENPRTLAFPHDRLIASSSAATGTKAMPSNELAQKPQPPTPIVDRFRALLK
QRDDDLRVSPEDDVSPPSTEEIVQLYEMVLAELIFNSKPIITDLTIIAGEQRDHGKGIAD
AICARILEVPVEHKLPSLYLLDSIVKNIGRDYAKYFSSRLPEVFCEAYRQVNPNQYPAMR
HLFGTWSAVFPPSVLRRIEEQLQFSPLVNQQSSGSTPLRASESPRPTHGIHVNPKYLRQL
DSSNVDSVGSQRLNSTGSVSHSPFSLGSNRLHPSSTTRLARSSSPSDIGLDRSLTSAVDE
FAAENSPKRFGERASPSNSVFDYRLGGAIGRDEEPNELRGKRYLDGSQKRFDTSVTYNNL
SNGLEHQRPRALIDAYGKDSGDRSLNDIPLVGRLGLNGLDHKATQMSWQNTEEEEFDWED
MSPTLAEQNRSNDYLPSTAPPSRSYRARPSLGTLNASPLESDSRSTWSTQAHLPSAEQSS
VITEDPVPPLGFSRGSTSTVSRFQSETNHSLGSRYPQEAWNIPFHLSQSSQNPLNARGRG
RNFQMPFVASGVSSGGEKMSAFVDKLPDVDARLHGPIAVASRMGASSVDTVNADSRPIIP
VSMGSRPPVNVHNSHPPPGHSIFALQNQRSQYGSINYSNTVKNQAPYNSLYVPEQQLDGY
ENKLLRSTKLTQLTSQNARPMPVNQRNQVQASPLQPQFLPPQEARENFISSAETSGPPYL
GLPSLNHRYTLQGHGGAVSTVMANPVPRIPYVPNSALHLRGEALPPLPPGPPPPSSQGIL
SIRNPGPVVSSNQPGSAYSGLFSSLMAQGLISLTNQSTVQDSVGIEFNADLLKVRHESVI
KALYSDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVNTSMWLSGA
EALGTDAAPGFMPAETIVEKKSDEEMAVPADEDQNSCALCGEPFDDFYSDETEEWMYKGA
VYLNAPDGSTGGMDRSQLGPIVHAKCRSESSVVSSGGLGQDEVGIIEEGSQRKRLRS
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggaaaagctcttactctcccgagaaaaccctagaaccctcgctttcccacac
gaccgcttaatcgcctcctccagcgcagccacgggtacgaaggccatgcccagcaatgag
ttagctcaaaagcctcaacctccgactccgatagtcgaccgcttcagggctctgttgaag
caacgagacgatgacctaagggtttcgcccgaggacgacgtgtcgccgcccagcaccgag
gaaattgtgcagctttacgaaatggtcttggcggagctcatcttcaattccaaacccatc
attaccgatctcaccatcatcgccggcgagcagagagaccacggaaagggcatcgccgac
gccatctgcgcccggattctcgaggtcccagttgagcacaaactgccttcactatatcta
ttagatagtattgtgaagaatattggccgggattatgccaagtacttctcttcccgccta
cctgaggtattttgcgaggcatacaggcaagtaaaccctaaccagtatcctgccatgcgc
catctctttggcacttggtcagcagtctttccaccttcagtccttcgcaggattgaagag
caactgcagttttctccactagtaaaccaacaatcatcaggatcaactcctctgagggct
tctgaatctcctcgaccgactcatggcatccatgtcaatcctaagtatttacgtcaattg
gatagctcaaatgtagacagtgttggatcccaaagattgaactcaactggaagtgtgagt
cattcacctttttccctgggatccaatcggttgcacccatcttcaactactaggcttgca
agatcatcatcaccttcagatattgggcttgatagatctctaacatcggcagttgatgaa
tttgccgcagagaattcccctaaaaggtttggtgaaagggcatctccatctaattctgtg
tttgattatagacttggtggagcaattggtagagacgaggagccgaatgaattgcgagga
aaacgctatcttgatggtagtcagaaacgatttgacacttctgttacatataataacctc
agtaatggactagaacatcagagaccaagagctttgattgatgcatacgggaaagacagt
ggagatagaagtttaaatgatatacctctggttgggcggctgggcctgaatggtctagac
cataaggcaactcaaatgtcgtggcagaataccgaagaggaagagtttgattgggaagat
atgagcccaactttagcagagcagaataggagtaatgattacttgccttcaactgcacca
ccttctagaagctacagggcaaggcccagccttggaacactgaatgcgagccccttggag
tcagatagtaggagtacttggtctactcaggcacatctaccttcagccgaacagtcctct
gttataactgaagatccagtccccccgcttggtttcagtcgtggatcaacaagtacggta
tctcgattccaatctgagacaaatcatagtctgggttctcgctaccctcaagaagcttgg
aatattcctttccatctctctcagtcttcgcagaatccccttaatgccagaggaaggggt
aggaatttccagatgccctttgtggcaagtggtgtatcttcaggtggtgagaaaatgtct
gcctttgttgacaagcttccagatgttgatgcacgacttcatgggcccatagctgttgca
tcaagaatgggtgcttctagtgttgacactgttaatgctgactctcgtcccattatacca
gtgtcaatgggttcaaggcctccagtaaacgtacataattctcaccctcctcctggccac
tcaatttttgcattgcagaaccagaggagtcagtatggttcaataaattatagcaacact
gtaaaaaatcaagctccatataattctttatatgtgcctgagcagcagttggatggttat
gaaaataagttgttgaggtcgacaaagttaactcaattgaccagtcagaatgccaggccg
atgcctgttaatcagcgaaaccaggtgcaggccagtcctttacagccacaatttcttcca
ccccaggaggcacgagagaattttatttcatctgcagaaacttccgggccaccttatttg
gggttaccatccttaaatcacagatacactttgcaagggcatggtggtgctgttagcaca
gttatggcaaatcctgtaccccgtatcccctatgtcccaaacagcgctttgcatttacga
ggagaagccttgccacctctaccaccaggtccgcctcccccttcctcacaaggcatactt
tccattcgaaaccctggtccagttgtctctagcaaccagcctgggagtgcatattctggt
ttgtttagttctcttatggctcaaggtttgatctcattgacaaatcaaagcactgtccag
gattctgtaggaattgagtttaatgccgaccttctcaaggtgcgtcatgaatctgtaata
aaggccctatacagtgatctcccaagacaatgcacaacatgtggccttaggttcaagtgc
caagaagagcacagtagtcatatggattggcatgtaacaaagaaccgtatgtctaaaaac
cgtaagcagaagccctcccgcaaatggtttgtaaatacgagcatgtggctcagtggtgca
gaggccttgggtactgatgcagctcctggatttatgcctgctgagaccattgtggaaaag
aagagtgatgaagaaatggctgttcctgctgatgaggatcaaaattcatgtgcgttatgt
ggagaaccttttgatgatttttatagtgacgagacagaggaatggatgtataaaggtgct
gtgtacttgaatgcacctgatggatcaacaggaggcatggataggtcgcagttaggtcct
atagtgcatgctaaatgcagatcggagtcgagtgtggtatcctctggaggtttgggacaa
gatgaagtgggaattattgaagaaggtagtcaaagaaaacgattgcggagttag
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