Prunus persica (peach): 18782737
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Entry
18782737 CDS
T03092
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pper
Prunus persica (peach)
Pathway
pper03013
Nucleocytoplasmic transport
pper03015
mRNA surveillance pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18782737
09122 Translation
03013 Nucleocytoplasmic transport
18782737
03015 mRNA surveillance pathway
18782737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18782737
03041 Spliceosome [BR:
pper03041
]
18782737
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18782737
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18782737
Spliceosome [BR:
pper03041
]
Complex C
Other components
EJC/TREX
18782737
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18782737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18782737
NCBI-ProteinID:
XP_007215422
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Position
G3:complement(6204854..6211098)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEIRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPIAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRILA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatcagagacaacgatggttacgaagaggagctggtcgattatgaagaggaa
gaccaaaatgcccccaactccgtctccgccaagccctctggtgataccgttaaaaagggc
tatgttggcatccacagttcaggattcagagacttcctgttgaaaccagagcttcttcga
gcgattgtggattctgggttcgaacatccttcagaagttcaacatgagtgcatccctcaa
gctatcttaggaatggatgttatctgtcaagcaaaatctgggatgggaaagaccgccgtc
tttgttctatctacccttcagcaaatagatccaattgctggtcaggttgctgctcttatt
ctttgccacacaagagaactggcttaccagatttgtcatgaatttgagagattcagtacc
tatttgccggacctgaaggttgcagtcttctatggaggtgtcagtatcaaggttcacaaa
gacttactgaaaaatgaatgtcctcacattgttgttggaacacctgggagaatattagct
ttggcaagagataaagagcttggactaaagaatgtcagacattttattcttgatgaatgt
gataagatgcttgagtcacttgatatgaggagagatgtgcaggagatctttaagttgact
cctcatgacaagcaagtgatgatgttttcagcaacactaagcaaagaaatccgccctgtt
tgcaagaaatttatgcaagatcccatggaaatttatgtagatgatgaggccaaattgaca
cttcatggtctcgttcagcactacatcaaattgagcgaacctgagaaaaaccgcaagttg
actgaccttcttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaaattacttgctgattgtaacttcccatctatctgcattcac
tctggaatgcctcaggaagaaaggttgaaacgttacaagaatttcaaggaggggctttca
aggattcttgtggcaacagatttagtcggaaggggaattgatatcgagcgtgttaacatt
gttattaattatgacatgccagattctgccgatacctacttacacagggttggcagagct
ggtaggtttggtaccaagggactggcaattacatttgtctcttcggcatcagactctgat
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttccggagcaaatt
gatacttctacatacatgcaagtatga
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