Prunus persica (peach): 18792164
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Entry
18792164 CDS
T03092
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pper
Prunus persica (peach)
Pathway
pper03008
Ribosome biogenesis in eukaryotes
pper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
18792164
09123 Folding, sorting and degradation
03018 RNA degradation
18792164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18792164
03019 Messenger RNA biogenesis [BR:
pper03019
]
18792164
03009 Ribosome biogenesis [BR:
pper03009
]
18792164
03016 Transfer RNA biogenesis [BR:
pper03016
]
18792164
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18792164
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
18792164
Ribosome biogenesis [BR:
pper03009
]
Eukaryotic type
Pre-60S particles
RNases
18792164
Transfer RNA biogenesis [BR:
pper03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
18792164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
18792164
NCBI-ProteinID:
XP_007225407
UniProt:
M5XM80
LinkDB
All DBs
Position
G1:complement(33640044..33649652)
Genome browser
AA seq
1076 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVVEEEPVVIDNISIPVDTSKPNPNGLEYDNLYLDMNGIIH
PCFHPEDRPSPSTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFETEGRKLPPKQQSQVVDSNVITPGTQFMAVLSVALQYYVHL
RLNNDPGWKNVKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAANCEGKAKRKAGEFDEKADGEAVAKK
PYQFLNIWTLREYLELEMQIPNSPIEIDSERIVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLFAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQADRIK
REKGQLRRGDDARPEVQPDSLVAVSRFHGSRLASGHSPSPYQQSGKFNGQANPRKVARLS
LEGSTIGAAIVEAENSLEGDVDGNKEELKAKLKEVLREKSDLFNSGNGDEDKVKLGEPGW
KDRYYEEKFSAKTPEEREAIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD
LKDLDQLNISFDLGSPFKPFNQLLGVFPAASSHALPEQYRKLMTDPNSPIIDFYPVDFEV
DMNGKRFAWQGIAKLPFIDEARLLAEVEKLEHTLTEEETRRNSVMFEMLFVTSSHPLSVC
IYSLDNRCKQLTDKERVEVKEQIDPKYRDACSEGMNGYISPCTGEPCPPVFRSPVESMED
IMDNQVICAIYRLPDGHKHITRPPAGVIFPKKIVSVGDLKPAPVLWHEESGRKPFENARR
PFENARRPFDNARQNPPGSISGRHLEEAAHRLIVNSLQPKVDSNGYGNQMHALRPSYVGP
PNYPPHHSYTNNGSYAQGHSRMPPPRTIHHPQAQHRASNVNAIPRHGDPAYNDRHSSSAA
HHHQNSSHTQHYERSSGQGYHHSGNHQSGGPIYPQRPIPQAPPGVTPVPYQGGYNNYQNY
QPSGPPAQGFDGWVPQVSQNPGRGYGRPQQSGNQYSGLDRRGHRRPPPPQPGYGHK
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattctatagatggttggcggagaagtatccgctcgtggtggtcgac
gtggtggaagaagaacccgttgtaatcgataacatatcgattccggttgacaccagtaaa
ccaaaccctaatggtcttgaatacgacaatctttacctcgacatgaacgggattattcac
ccctgttttcaccccgaagataggccttctccatcaacctttgatgaggtatttcagtgc
atgtttgactacatagatagactctttgtgatggtgcgacctcgaaagctattatacatg
gctattgatggcgttgcccccagggcaaaaatgaatcaacagcggtctcgccgatttaga
gctgctaaagatgcagcagatgcggcagctgaagaagaacggctacgtgaggagtttgaa
acggaggggagaaaacttccacccaaacagcagtcacaagttgttgattctaatgttatc
actcctgggactcaatttatggctgttttgtcagttgcattgcaatactatgtccatctt
agactaaacaatgaccctggatggaaaaatgttaaggttattctttctgatgcaaatgtc
ccaggtgaaggggaacacaaagttatgtcatatattcgccttcaaagaaatcttcctggt
tatgatccaaatacacgccattgcctgtatggtttggatgccgatttgattatgcttgct
ttggctactcatgaagttcatttttcaattcttcgagaggttgttttcactcctggacag
caagacaaatgcttcctatgcggtcagatgggtcatttagcggcaaattgcgaaggaaag
gcgaaacggaaggccggagagtttgatgagaaagctgatggcgaggctgtggccaagaag
ccataccagtttctcaacatctggactcttagagaatatttggagcttgagatgcaaatt
cccaattccccaattgagattgattctgagcgcatcgtagatgattttatattcatttgt
ttctttgttggcaacgatttcttaccacacatgccgacactggagattcgtgagggtgcg
atcaacttgcttttcgctgtatacaaaaaggaatttagggcattgggtggatatttgact
gatggaagcaagccgaatttgagtagagtagagcatttcattcaggcagttggttcttat
gaagataaaatatttcagaaaagagctcgattgcatcagcggcaggcagatagaataaag
cgtgagaaggggcaattgagaagaggagatgatgcaaggcccgaagtgcaaccagattca
ttagttgcagtttctcgttttcatggttctcgtcttgcttcaggtcattcgccttccccc
tatcaacaatctggaaaatttaatggtcaagcgaatcctcgaaaggtagcacgtttgtct
ttagaggggtcaaccatcggtgctgctattgttgaagctgagaacagtcttgaaggagat
gtagatggaaacaaagaagaattaaaagcaaagttaaaggaggttcttcgcgagaaatct
gacctttttaactcgggaaatggtgatgaagacaaggttaaattgggagaacctgggtgg
aaagataggtattatgaagaaaagttttctgcaaaaactcctgaagaacgtgaagcaatt
cgaaaagatgttgttttgcgatacacggaaggtctatgttgggtgatgcactattattat
gaaggggtttgttcatggcagtggttttatccctatcattatgcaccatttgcatctgat
ctcaaggaccttgaccagctaaatataagttttgatttgggctctccctttaaaccattc
aatcagctgttgggggtttttcctgctgcaagctcccatgcccttcctgagcagtatagg
aagctgatgactgatccaaactcacctatcattgatttttaccctgttgattttgaagtg
gatatgaatgggaagcggtttgcttggcagggtattgcgaagttgccttttattgatgaa
gcccgtcttcttgctgaggttgaaaaactcgaacatacattaacggaagaggagacccgt
agaaacagtgtgatgtttgagatgctttttgttacatcgtctcatcctctctctgtatgc
atatattctcttgacaatcgctgtaaacagttgacagacaaagagcgagttgaagttaag
gagcagatcgatcccaagtacagggatgcatgcagtgaaggtatgaacggttatatatct
ccttgtactggagagccttgtcctccggtgtttcggtctcctgttgaaagcatggaggat
attatggacaaccaagtaatatgtgcgatatacagactaccagatgggcataagcatata
actcgaccacctgcaggtgttatatttcctaagaagattgtgtcagtgggggatttgaag
cctgcacctgttttgtggcatgaagagtctgggcgaaagccatttgaaaatgccagaagg
ccatttgaaaatgccagaaggccatttgacaatgccaggcagaaccctcctggaagcatt
tctggaagacatctcgaggaagcggcacatcgccttattgttaatagcttacagcctaag
gtagactccaatgggtatggcaatcagatgcatgcccttcgaccatcttatgtcgggcct
ccgaattacccaccacaccattcctacaccaataacggaagctatgcacagggacacagt
agaatgccaccacctagaacaatccaccatcctcaagctcaacaccgagcttccaatgtt
aatgccatcccaagacatggtgaccctgcatataatgatcgacattcttcatcagctgcc
caccatcatcagaatagctctcatactcaacattatgaaaggagttctgggcaaggatac
caccattcaggaaatcaccagagcggaggaccaatctaccctcagagacctattccacaa
gctccaccaggagtcactcctgttccttatcaaggtgggtataacaactatcagaattac
caaccatctggaccgcctgctcaaggttttgatggctgggttccacaggttagccagaac
ccgggcagagggtatggccgccctcaacagtctggaaaccagtactccggattggacaga
agaggccataggaggccacctccaccccagcctgggtatggccacaagtag
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