Prunus persica (peach): 18792433
Help
Entry
18792433 CDS
T03092
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18792433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18792433
03041 Spliceosome [BR:
pper03041
]
18792433
03009 Ribosome biogenesis [BR:
pper03009
]
18792433
03016 Transfer RNA biogenesis [BR:
pper03016
]
18792433
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18792433
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18792433
Spliceosome [BR:
pper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18792433
Complex C
U4/U6.U5 tri-SnRNP related factors
18792433
Ribosome biogenesis [BR:
pper03009
]
Eukaryotic type
Pre-60S particles
Helicases
18792433
Transfer RNA biogenesis [BR:
pper03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18792433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
18792433
NCBI-ProteinID:
XP_020409735
LinkDB
All DBs
Position
G1:complement(4619027..4628483)
Genome browser
AA seq
1016 aa
AA seq
DB search
MNFYYKKKNSILIGDFCSVWLKVDSILGMEESPTVAKRKEPEGSEITENPIHESPQKRRH
LTRTCVHEVAIPSEYTSTKGESVHGTLSNPVYNGKAAKTYEFTLDPFQQISVACLERNES
VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDV
TISPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFMPPA
VKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPVGGNGLYLVVDENE
LFREENFVKLHDTFSKQKSDGHRSSNGKASGRTAKGGTASGGSDIFKIVKMIMERKFQPV
IIFSFSRRECEQHAMSMSKLDFNTQEEKDDVEDVFRKAVLCLNEEDRQLPAIELMLPLLQ
RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH
RYIGSGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYS
ILNLLSRAEGQFTAEHVIKNSFHQFQHEKALPDIGKKVSNLEQEVAILDASGEAEVAEYH
KIKLDIAQLEKKMMTEITRPERVLYFLLPGRLVKIREGGTDWGWGVVVNVVKKPSSALGS
LPSRGGGYIVDTLLHCSPGSSENSSQPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISI
PSDLRPLEARQSILLAVQELGTRFPQGLPKLNPVKDMGIEDPEIVDLVNQIEALEQKLYA
HPLHKSQDVQQIKCFQRKAEVDHEIQQLKSKMRESQLQKFRDELKNRSRVLRKLGHIDTE
DVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALASCFIPGDKSNEQIQLRTE
LARPLQQLQESARRIAEIQHECKLEVNVDEYVESTVRPYLMDVIYCWSKGASFADVTQMT
DIFEGSIIRSARRLDEFLNQLRTAAHAVGEVALEEKFAGASESLRRGIMFANSLYL
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgaatttctactataagaagaaaaactcaatattaataggagacttttgttcagtttgg
cttaaagtggattcaattttaggaatggaagaatctccaacagttgcaaaacgaaaagag
cctgaagggtcagagatcacagaaaaccccatccatgaatctccccagaagcgacgccat
ttgacccgaacatgtgtgcatgaggttgcaattcccagtgagtacacttcgaccaagggt
gagtcggttcatggaaccctctcgaatcctgtgtataatggcaaggcggccaagacatat
gaatttacccttgacccatttcagcagatatctgtggcatgcttagaaaggaatgagtcg
gttttggtttctgcccatacttcagcaggtaagactgcagtcgcagagtatgcaattgcc
atggcttttagagataagcagagggttatatatacttcaccactgaaggctttgagcaat
cagaagtatagagagctcagccaggagtttaaagatgttggattgatgactggagatgtt
acaatctcacctaatgctagttgtttggtcatgacaactgagatccttaggggaatgctt
tacaggggttcggaggttttaaaggaagttgcctgggttatctttgatgaaattcattac
atgaaggatcgcgaaagaggggttgtttgggaagagagtattatatttatgcctccagct
gttaaaatggtttttctttcagccacaatgtccaatgccactgagtttgcagagtggatt
tgtaatttgcacaaacagccttgccatgtggtgtacacagattttcgaccaactcctctg
cagcattacgtttttccagtgggtgggaatgggttgtatcttgtggtggatgagaatgaa
ctgttcagggaggaaaattttgtgaagctgcatgatactttttcaaagcagaaaagtgat
ggtcacaggagttcaaatggcaaggcaagtgggagaactgcaaaaggtgggactgcatct
gggggttctgatatcttcaaaattgttaagatgattatggaacggaaatttcagccagtt
ataattttcagcttcagtagaagagagtgtgaacaacatgcgatgtccatgtctaagctt
gattttaacacccaagaagaaaaggatgatgttgaagatgtttttcgtaaggcagtgctc
tgcttaaacgaggaagacaggcagttgcctgctattgagttaatgttgccactccttcag
cgaggcattgctgttcatcattctggccttcttcctgttatcaaggaactggttgaactt
cttttccaggaaggccttgtaaaggcactttttgccactgagacatttgcaatgggctta
aacatgccagcaaaaactgttgttttcacagctgttaagaagtgggatggtgatagtcat
cgatatataggatctggtgagtacattcagatgagtggaagggctgggcgtcgtggcaaa
gatgatcgcggtatttgtatcataatgattgatgagcagatggaaatgaacacactcaag
gacatggttttgggtaaaccagctcctttagttagtactttcagactcagctactactca
attttaaatttgctgagccgtgcggaaggccaattcacagctgaacacgtgataaagaat
tcattccaccaatttcagcacgaaaaggctttacctgatatagggaaaaaggtttcaaat
cttgagcaggaagtggcaatacttgatgcatcaggagaggctgaagttgctgagtatcat
aagataaaacttgatatagcccaacttgaaaagaaaatgatgacagagataacgaggcct
gaaagagttctatattttcttcttcctggtcgcctggtcaagattagggaaggtggtaca
gattggggctggggagttgtagttaatgtggttaaaaagccgtcatccgcattaggctca
ctgccttcacgcggtggtggttatatagtggatactttgcttcactgttctcctggttca
agtgagaacagttcacaaccaaaaccatgccctcctcgtcctggagaaaagggtgaaatg
catgtagtccctgtccaattgcccctgatttctgctctaagcaaactcagaatatccatt
ccttctgatttgcggccattggaggcgaggcaaagtattctgcttgcagtccaggagctg
ggaactcgttttccacaaggccttccaaagctgaatcctgtaaaggatatgggcattgaa
gatcctgaaattgttgacttggttaatcaaatagaggcccttgagcagaaattatatgca
catccgctgcataagtctcaagatgttcagcagattaaatgttttcaacggaaagcagag
gtggatcatgaaattcaacaacttaagtccaagatgcgtgagtcccagcttcaaaagttt
cgtgatgaacttaagaaccgttcgcgagtattgaggaagcttggtcacattgatactgag
gatgttgtccagttaaaggggcgagcagcctgcttgatagacacaggagatgaactcctt
gttactgaactgatgtttaatggtacgttcaacgatttggatcatcatcaaattgcggct
cttgcaagttgttttattccaggagataaatcgaatgagcagatacaattgaggacagag
cttgcaagaccattacaacaactgcaagagagtgcaagaagaatcgcagagatacaacat
gaatgcaaattagaagtgaacgttgatgagtatgtggaatcaacagtgaggccatacttg
atggatgtgatttattgttggtcaaagggtgcaagttttgcggatgttacacaaatgaca
gatatatttgagggtagtatcattagaagtgctagaagacttgatgaatttttgaatcag
ttgcgtactgccgctcatgctgtaggagaagttgctttagaggagaaatttgctggagca
agtgaaagccttcggcgaggtatcatgtttgcgaactccctttatctgtag
DBGET
integrated database retrieval system
