Prunus persica (peach): 18792890
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Entry
18792890 CDS
T03092
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pper
Prunus persica (peach)
Pathway
pper03013
Nucleocytoplasmic transport
pper03015
mRNA surveillance pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18792890
09122 Translation
03013 Nucleocytoplasmic transport
18792890
03015 mRNA surveillance pathway
18792890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18792890
03041 Spliceosome [BR:
pper03041
]
18792890
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18792890
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18792890
Spliceosome [BR:
pper03041
]
Complex C
Other components
EJC/TREX
18792890
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18792890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18792890
NCBI-ProteinID:
XP_007222437
UniProt:
M5XQ24
LinkDB
All DBs
Position
G1:complement(40107564..40113123)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYEEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGHNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaactagggacgatgtgtacgaggaggagcttgtcgattatgaagaagaggag
gagaaggcccccgactctgcagctaaagtcaatggcgaagcccctaagaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagccagagcttcttcgagctatt
gtggactccgggtttgagcatccgtctgaagtgcaacatgaatgtattcctcaagctatc
ctgggaatggatgtcatttgtcaagctaaatctgggatggggaaaactgctgtttttgtt
ctatcaactttgcagcagattgaccctgtagcaggccaagtttctgcactcgttctttgc
catactagagaattagcttaccagatctgtcacgaatttgagaggttcagtacgtacttg
cctgatctcaaggttgctgtcttctacggtggtgtcaatatcaaacttcacaaagatttg
ctgaaaaatgaatgccctcacattgttgttggaacgcctggaagaatattggcattggca
agggataaagacctctccttgaagaatgtgaggcatttcatccttgatgaatgtgacaaa
atgcttgaatccctagacatgaggagagacgtgcaagagattttcaagatgacgccgcat
gataagcaagtgatgatgttttctgcaacactcagcaaagaaatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgtcgacgatgaagccaagttgacactgcat
ggtctagtacagcactacatcaagttaaccgaggcagagaaaaaccgcaagttgaacgac
ctccttgatgcactggacttcaaccaagttgttatattcgtcaagagcgtgagcagagcc
gctgaattgaacaagttactttcagagtgtaattttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcataacaggatt
cttgtggccacagatttggtcggcagaggaatcgacattgagcgtgttaacatcgttatc
aactatgacatgccagattctgctgacacttatttacacagggttggcagagctggcagg
tttggcaccaaaggtctggcaattacatttgtttcatctgcagcggactctgatgttctt
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgatact
gccacatacatgccgtcttaa
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