Prunus persica (peach): 18793659
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Entry
18793659 CDS
T03092
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pper
Prunus persica (peach)
Pathway
pper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18793659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pper03041
]
18793659
Enzymes [BR:
pper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18793659
Spliceosome [BR:
pper03041
]
Complex C
Other components
Step II factors
18793659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
ABC_tran
Sigma54_activ_2
AAA_16
NPHP3_N
MMR_HSR1
SLFN-g3_helicase
Helicase_RecD
ATPase_2
AAA_29
T2SSE
Sigma54_activat
PhoH
DAP3
NB-ARC
Motif
Other DBs
NCBI-GeneID:
18793659
NCBI-ProteinID:
XP_020411623
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Position
G1:24695574..24704323
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AA seq
700 aa
AA seq
DB search
MADLPILQFEETIMKAVEENTVVVIIGETGSGKSTQLSQILHRRGYTKSGIVGVTQPRRV
AAVSVARRVSQELGVRLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPELDEYSV
VILDEAHERSLNTDILLGLMKRLVKRRASNFKVLITSATLDDEKVSQFFSECPVVRVPGK
LFPVEIVYSHERPVSYLESSLATALDIHMKEGEGDVLIFMTGQDDIDKLVSKLEDRVRSL
EEGSCMDAIILPLHGSLQPEMQVRVFGPRPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQAHQRAGRAGRTRPGKCYRLYPSAVYEDEFLDVTIPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSPESLQDALKQLYLIDAIDENGLITRIG
KTMAELPLEPSLSRTLMEANEHGCLSQALTVAAMLSAETTLLPGRSKNTEKKRKHDYLDL
PDGSGWGDHIQLLQIYECWHQTNYDIDWCKDYQLQVRGMKFVKDVRRQLSQIMQKIAKGP
LDVQTSRRWKESQQDYHNLRRALCVGYANQLAERMVYHNGYRTLGFKPQVVQVHPSSVLK
PDDEGKLPDYVVYQELIATSRPYLRTVCAVNIAWVTPILDKVNKININKLSGGIGRIEEH
TEENMSDLPKTDNVVAAVPDDHESKIQAARERFLARKGKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctaccaatcctccaattcgaagagacaatcatgaaagcagtagaagaaaac
acggtcgtagtgattatcggagagaccggttcaggaaagagcacccaactctctcaaata
cttcacagaagaggctacaccaagtctggaatcgtcggcgtcactcagcctcgccgagtc
gccgctgtctccgttgccagacgagtttcacaggagcttggtgtccggcttggggatgaa
gttggatacgccatcagatttgaagatagaacgtcagagaggacgcgtatcaagtacctc
actgatggagttctccttcgtgaaagtctttccaatccagagctcgatgagtactctgta
gtaatacttgatgaagctcatgaaaggagcctgaacacggacatattgctgggactgatg
aaacgcttggttaaaaggcgtgcctcaaatttcaaggttctgatcacttcagcaactctt
gatgatgaaaaagtatcacaattcttttcagaatgccctgtagtgagagtcccagggaag
ttatttccagtcgaaatagtgtacagtcatgagcgtcctgtcagctatcttgagtcatct
ttagcaacagctctcgatatacatatgaaggaaggggaaggtgatgtcttaatattcatg
actgggcaggatgatatagataagttggtatctaagttagaagatagagttcgaagcctg
gaagaagggtcttgcatggatgccataatccttcctcttcatggttctttgcagcctgaa
atgcaggtacgtgtttttggacctcgacctccaaattgtaggagatttattgttgccaca
aacattgctgaaacttctttgactgttgatggtgttgtgtatgttattgattctggttat
gtgaagcaacggcagtacaacccgtcaactggcatgtattccctcgatgttgttcaaatt
agcaaggtacaagcacatcaacgtgctggacgagcaggaagaacacgtcctgggaagtgc
tatcgattatacccttccgcggtttacgaggatgagttcctggatgtaacaattcctgaa
atacaacgctcttcacttgctggaagtgttctttatttgaaatctttggacctccctgat
attgatattctcaaatttgattttcttgattctccttcacctgagtctttacaagatgct
ctgaagcaattgtatcttatcgatgctattgacgaaaatggattgatcacaagaattgga
aaaacgatggctgagcttccactagaaccttcattgtcaaggaccttaatggaggcaaat
gagcatggttgcttatcccaggccttgactgttgctgctatgttatccgcagaaaccaca
ttgcttcctggtcgaagcaagaatactgagaagaagaggaaacatgattatttggacctt
cctgatggttctggctggggtgatcatatccagttgctacagatctatgagtgctggcat
cagactaactatgacattgattggtgcaaggattatcagttgcaggtgagagggatgaag
tttgtgaaggatgtcaggagacagctatctcagatcatgcagaaaatagcaaaaggacca
ttagatgtacagacaagcagaagatggaaagaaagccaacaggattatcacaacttgagg
agggccttgtgtgtgggatatgcaaatcagctcgctgagagaatggtatatcacaatggg
tatcgaaccttaggttttaagccccaagtagtacaggtgcatccatccagtgtgctaaaa
cccgatgatgaaggaaaattgccagactatgttgtgtaccaagaactcattgcaacttcc
cgcccatacttgcgtactgtatgtgccgtaaatattgcttgggtcacacccattttggac
aaagtgaataaaataaatatcaacaagctgagtggtgggattggtcgtattgaagagcac
acagaggaaaatatgtctgatttgccaaagacagataacgttgttgcagcagttcctgat
gatcacgaaagtaaaatacaagcagctagggaacgatttcttgctcgtaaaggaaagaaa
tga
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