Prunus persica (peach): 18793791
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Entry
18793791 CDS
T03092
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pper
Prunus persica (peach)
Pathway
pper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18793791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pper03021
]
18793791
03019 Messenger RNA biogenesis [BR:
pper03019
]
18793791
Transcription machinery [BR:
pper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18793791
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
18793791
U7-dependent histone pre-mRNA processing factors
18793791
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
18793791
NCBI-ProteinID:
XP_007224105
UniProt:
M5XH77
LinkDB
All DBs
Position
G1:46824688..46829655
Genome browser
AA seq
692 aa
AA seq
DB search
MASMEQPSPLKRREASASRKDDKLIITPLGAGNEVGRSCVYLSYKGKTVLFDCGIHLAYS
GMAALPYFDEIDPSTIDVVLISHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLT
DYVKVSKVSVEDMLFDEQDINASMDKIEVIDFHQTVEVEGIRFWCYTAGHVLGAAMFMVD
IAGIRVLYTGDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQHHQPRHIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWANHPDLQNIPIYYASPLAKRCLSVYETYTLS
MNDRIRNAKSNPFIFKYISPLKSIENFKDVGPSVVMASPGGLQSGLSRQLFDKWCSDKKN
ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADCFQTTAFLEELR
PPNIILVHGEANEMGRLKQKLMTQFADRNTNILTPKNCQSVEMYFNSQKMAKAIGRPAEK
TPEVGESISGLLVKKGFSYQIMASDDLHVFSQLCTANVRQRITIPFASGFIVIKHRLSQI
YESVESSVDEESGVPTLRVHDRVTVKQDTDKHISLHWSSDPISDMVSDSIVALILNINRE
VPKVVVESEDVKTEEENGKKVEKVIHALLVSLFGDVKPGENGKLVITVDGNVAQLDKQSG
DVESEHEGLKEKVKAAIRRIQSAVKPIPLSAT
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatggaacaaccctcacctctgaagcggcgtgaggcttctgcatcaagaaaa
gatgataaacttatcataactcctttaggagctggtaatgaagtcggccgctcttgtgtg
tatttgtcctacaaagggaaaactgtgttgtttgattgtggaattcacctcgcatattcg
ggcatggctgctttgccgtactttgatgagattgatccttccacaattgatgtcgtcctc
attagtcattttcacttggatcatgccgcttccctaccttactttcttgagaagaccaca
ttcaaaggccgagtctttatgacttatgcaacaaaggccatctacaagttgcttttgacg
gattatgtgaaagtgagcaaagtttcagttgaagatatgttgtttgatgagcaggacata
aatgcctcaatggataaaattgaggttattgatttccatcaaacagtagaggttgagggc
attcgattttggtgctatactgctggtcatgtccttggtgctgctatgtttatggttgat
attgccggcattagagtcctgtacactggtgattattcacgtgaagaagaccggcatctc
cgtgctgctgagatcccacagttctcccctgatgtatgcattattgaatccacgtatggt
gtacagcaccatcaacctcggcacatcagagagaagcgatttactgatgttatccattca
accatctctcaagggggtcgtgtcttaattcctgcttttgcactcggccgtgcccaagaa
cttctcctgatccttgatgagtattgggcaaaccatcctgatctccaaaatattcctatt
tattatgcttccccacttgcaaaaagatgtttatctgtatatgagacatacaccctttcc
atgaacgataggatccgcaatgcgaagtcaaatcccttcatattcaagtacatatcacca
ctaaagagcattgaaaatttcaaagatgtaggcccgtcagtggtgatggcaagccctggt
ggtcttcagagtgggctgtcaaggcagctatttgataagtggtgctctgataagaaaaat
gcgtgtgttattccaggttatgtggttgaagggacactagctaaaacaatcatcaatgaa
ccgaaggaggtaactcttatgaatggactcactgctcctctcaacatgcaggtccattac
atttcattctctgctcatgcagactgttttcagacaactgcatttttggaagagctgagg
cctcctaatataatccttgttcatggagaagctaatgagatggggaggctcaaacagaag
ctgatgacccagtttgctgatcgtaacaccaatatcctcaccccaaagaattgtcagtct
gttgaaatgtattttaactcacagaaaatggcaaaagctattggaaggcctgctgagaag
acccccgaagttggtgaaagtatcagcggtttactggtaaaaaaaggctttagttatcaa
ataatggcttctgatgatcttcatgtcttctcacagctgtgcacagcaaatgtcagacaa
cggattactatcccgtttgctagtggctttattgtgataaaacaccggcttagccaaata
tatgagagtgtagagtcttcagtggatgaggaatctggagtgccaacattgcgagtgcat
gatcgggtgacggtgaagcaggatacagataaacacatttcactacattggtcgtcagat
cctataagtgacatggtgtcagactccattgtggctcttattttgaatatcaaccgagaa
gtccccaaggtagttgttgaatcagaggacgtaaaaactgaggaagagaacgggaagaag
gtggaaaaggtcattcatgcacttcttgtatcactctttggggatgtgaagcctggagaa
aatgggaaattagtgattacggttgatgggaatgtggcacagcttgataaacagagtggg
gatgttgagagtgaacatgaaggtctcaaggaaaaagtaaaggcggcaattcgtcgaatc
caaagtgcagtgaagccaatccctctttctgcaacttag
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