Pectobacterium peruviense: DUT67_04365
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Entry
DUT67_04365 CDS
T10302
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppeu Pectobacterium peruviense
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppeu03009
]
DUT67_04365 (rlmD)
Enzymes [BR:
ppeu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DUT67_04365 (rlmD)
Ribosome biogenesis [BR:
ppeu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DUT67_04365 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_ANTKMT
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
PabTrmU54_TRAM_dom
Methyltransf_15
Methyltransf_32
PDGF
CMAS
Motif
Other DBs
NCBI-ProteinID:
XDF55645
LinkDB
All DBs
Position
976779..978131
Genome browser
AA seq
450 aa
AA seq
DB search
MAQFYSPNRRVTTRKAVPAKNLTVTVESLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT
EEKRHFSHAKLKRLLTPSPQRVEPQCPHFTRCGGCQQQHAEITLQQSSKTAALMRMMTRE
TGVELPAASLIAGTPYAYRRRARLALYFHAKDQRLLMGYRQSNSHDLVDIKACPVLRPEL
DALLQPLRECLSRLKAVKRLGHAELVQAENGPLLVLRHLDPLHPSDEQALRDFAQRQGVS
VYLAPDADSLTCLHGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR
ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ
QPWAAQGFDKILLDPARAGAAGVMEQITKLAPKRVVYVSCNATTLARDSKVLLAAGYRLA
NVAMLDMFPHTGHLESMALFLHDTGTRKAQ
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgtgtgacgacccggaaagcggttccagcgaaa
aacctcactgtcacggtcgagtcacttgacccatttgggcaaggtgtcgcacgtcacgaa
ggaaagacagtgtttgtcacgggtgtgctgccgggagagcaggctgaggttcaactgacg
gaagagaaacgtcatttttcacacgcaaaacttaaacgcctgctgacgcctagcccacag
cgcgttgagccgcagtgtcctcattttacccgctgcggcggctgtcagcagcagcatgca
gaaattacgctgcaacagagcagtaaaacggcggcgttgatgcgcatgatgacgcgagaa
acgggcgttgaactgcctgctgcgtcgctcattgctggcacaccttatgcctatcggagg
cgtgcgcggcttgcgttatactttcatgcaaaagatcagcgattgttgatgggctatcgg
cagtcaaattctcacgatctcgtggatatcaaagcctgtccggtgttgcggcccgagctt
gacgcgctactgcaaccgttacgtgaatgcctgagccgattaaaagcggtgaaacgcctt
gggcatgcggaactggtgcaggcggagaatggtccgctactggtgctacggcaccttgat
ccactgcatccatcggatgagcaggcattgcgtgattttgcccagagacagggtgtctcg
gtttatctggcaccggatgctgactcgctgacgtgtttgcacggtgaggaaccggtttat
cacgtcgccgggctgacgctggcatttagcccgcgtgactttattcaggtcaatgacgcg
gtgaaccagcagatggttgcgcaggcactggcgtggttggatgtgcaaccacaggataga
atattggatctgttttgcggcatgggcaatttcacgctgccgctggcacagcgtgccgcc
agcgttgtcggtgtagaaggggttaccgcgctagtcgaaaaagggcgcgagaatgcccga
cgcaatgccctgtccaatgtcacattttttcaccaaaatcttgaggatgacgtcacgcag
cagccgtgggcggctcagggttttgataagatattacttgatccggcacgtgctggcgca
gcaggcgtgatggagcagataaccaaactggcaccgaaacgggtggtgtatgtttcctgt
aacgccacgacgctagcacgcgacagcaaagtcttactcgcagccggttaccggctggca
aatgtcgcgatgttggatatgtttccacataccggacaccttgaatcgatggcactgttt
ttgcacgataccggcacgcggaaagcgcaataa
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