Pectobacterium peruviense: DUT67_06960
Help
Entry
DUT67_06960 CDS
T10302
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu00040
Pentose and glucuronate interconversions
ppeu01100
Metabolic pathways
ppeu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DUT67_06960
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DUT67_06960
Enzymes [BR:
ppeu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DUT67_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
XDF56107
LinkDB
All DBs
Position
1533642..1535210
Genome browser
AA seq
522 aa
AA seq
DB search
MFRAVIGAGRLRTCAVAIALSGMVLSGCDNSQQPVAETAPPDLQVKTTPFGWAAQYQNTD
GKFYATTGGEGAHENSIYIVSNRQELKDALNNVRSARYIAGDADAELQAKLEPKIIYWQG
TIRGDDLGNGRNANAEDYKTKPNKTTFDFDLYVKAFDQNYLAQLKAIADAGGTDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSNAKLVEGYLSLNTLSQTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWVDHCTFTDGEYPD
HLEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFSQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHCGATDTNYPILYAIGMGFDSSILSESNVFNFQGGSA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAATSSGKAVPGWAL
ETCTNELEWSPPYVYSVGKSIAAVEKYVLENAGSGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattggggctggtcgtttacgcacctgtgcggtagctattgccctt
tctgggatggtactttctgggtgtgacaatagtcagcagccagtggcagaaacggcgccg
ccagatttgcaggtgaaaaccacaccgtttggttgggctgcacaataccagaacacggac
ggtaagttttacgcgacgacgggtggtgagggtgcgcatgaaaatagcatttatatcgtc
agtaatcgtcaggaattaaaggatgcgttaaataatgttcgcagcgcccgttatatcgca
ggcgatgccgatgcggaactacaggcaaaattagaacctaagattatctattggcaaggc
actatccgtggtgatgatttagggaatggccgcaatgcgaatgcagaggattataaaact
aaaccgaataaaactacgttcgattttgatttatatgtcaaagcgttcgatcagaattat
ctggcgcagctgaaagccattgcggatgcggggggaacggatgcggcggccgccagtgca
gagcttagcctgttgaaaaaacagaatggtcagcgttcgcagtatgccaataaccagaaa
gcgcagattcaatttcaggttccaccgaataccacgattttaggtgtaggtagcaacgcg
aaactggtggaggggtatttatccctcaatacgttaagccaaacgttcggcaaaacggat
aacagcaacattattatccgtaatattacgtttcaggcaccgcgtgactttgctccagcc
tgggatgcgggcgacggtgataaaggcaactggaatgcgcgttatgattccgtatcgatt
aatgccagtaaaaatgtctgggttgaccattgcacttttacggatggtgaatatcccgat
catttagagcccgtgctgttcggtaaacatatccaacgccacgatggcctgctggatata
gaagatggtgccgattacctgacaatttcctacaacattttttcccagcatgacaaaacg
gtattaattggctctggtgacggtgataagggggaatatcggatcacttttgaaggcaat
ttatgggacaacagcgtgcagcgctcaccgcgtgtgcgttttggtcaggtgcatttgctt
aataactatcactgtggtgcaacggatacaaactatcccattctgtatgcgattgggatg
ggtttcgattcatcgattctttccgaaagtaacgtttttaatttccagggcggtagtgca
gacgaaaaactgattattggtgcttataagggaagtaaatttaaagacaacggttcttgg
ttcaatggcaatccggcaagcaatctgaatcaaattgccttagataaatgtagtgcgctg
caagaaaccgaaaaggctgctgctacaagttctgggaaagcggtgccgggatgggcgctg
gagacctgcaccaatgaattggaatggagcccgccttatgtgtatagcgttgggaaatcc
atcgccgccgttgagaaatatgttctggaaaacgcgggttctggaaaactggatatttct
ctcccctag
DBGET
integrated database retrieval system
