Pectobacterium peruviense: DUT67_08515
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Entry
DUT67_08515 CDS
T10302
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03018
RNA degradation
Brite
Enzymes [BR:
ppeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DUT67_08515 (rne)
Messenger RNA biogenesis [BR:
ppeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DUT67_08515 (rne)
Ribosome biogenesis [BR:
ppeu03009
]
Prokaryotic type
rRNA processing factors
DUT67_08515 (rne)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XDF56398
LinkDB
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Position
complement(1869769..1873125)
Genome browser
AA seq
1118 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRQAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMVEMPEE
TTPSVAKATPVVAKAAEEAQPGLISRFFSALKGVFASEPTAKAADNVDEKKVEEEKSTEG
QRTDRRNSRRQSNNRRDRGSRDNRDNRDNRDNRDNREQRDDQRRNKRQTEEVVVETRVAE
NVEKVGSEEQPRREPRAERQRRRQDERRQAPTEEKIQPTVDESDDNAAEQDKPTQVMQRR
QRRQLTQKVRVQSEAQQVTLSENTAPVAEAPELAQAYVKPNDVAVDHNESDNEQNDANRA
NGENGGMPRRSRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGKVWVSYP
VAQPQQAETQQQEENVAAIETPLLPAVVDVALTEQADTVESNAIENVAITEAVVQEDAVV
TATAQSADVVQDSNVADVEVSAADEDTVVEPITENTAIDDAIAAIAVSAVEEAKAVEVDD
TASTQVTENAQTVEATVAVETAVAEEKPADDIADTTETADVTEPVSTPVISAVQEISQPQ
IVQDEPVVATSAQPVVEEPVSSVAKPAAVVGVIEQPSYKLHATAPMTKAPAPAYNAEPAQ
HSDWVRPAYPFSGKGSAGGHSAVNQSTAPATKPTPVNE
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatatagaaagtccaggtcatgagcagaagaaagcaaat
atctacaaaggtaaaatcactcgtatcgaacccagtcttgaagcggcttttgttgattac
ggcgctgaaaggcacggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagc
aactatgcttcccatggccgtcctaacattaaagacgtgttacgtgaaggtcaggaagtt
attgttcaggtagacaaagaagagcgtggcaacaaaggcgcagcgctgaccacgtttatc
agcctggctggtagctatctggtcttaatgccgaataaccctcgcgcaggtggtatttca
cgccggatcgaaggtgacgatcgtactgaactcaaagaagcgctgggatcgttacagtta
cctgatggcatgggactcattgttcgtacggctggtgtgggtaaatccgctgaagcactg
caatgggatctggctttccgtctgaaacactgggacgcgataaaaaaagccgcggaaggt
cgtcaggcaccattcctgattcatcaggaaagtaacgtgatcgtccgtgctttccgtgat
tatctgcgcccagacattggcgagattctgatcgacaatccaaaaattctcgacctggcg
aaagaacacatttctgcgctgggccgccccgatttcagcagtaaaatcaaattgtatagt
ggtgaaatcccgcttttcagccactatcagatcgaatcgcagattgaatcggctttccaa
cgtgaagttcgcctgccgtccggcggctctatcgttatcgatacgaccgaagcgttgacg
gccattgatatcaactccgcccgcgcaacacgcggtggtgacattgaagaaacggcgttt
aacaccaaccttgaagccgctgacgaaattgctcgccaattacgcctgcgtgacctcggt
ggcctgatcgtcatcgacttcatcgatatgaccccagttcgtcaccagcgtgaagttgaa
aaccgcctgcgcgattcagtacgccaagatcgtgcacgtattcagatcggtcggatctcc
cgctttggtctgctggaaatgtcacgtcagcgtctgagtccttcactgggcgaatccagc
catcatgtttgtccacgctgtactgggacaggcacgattcgtgacaatgaatcactttcg
ctgtccattcttcgtctgattgaagaagaagcgctgaaagaaaacaccaaagaagttcac
gctattgttccagtccagattgcatcctatctgctgaacgagaaacgtgatgccgttaac
gccattgagacacgtcagggtggtgtacgcgccatcatcgtgccacatgacggcatgcaa
acaccgcactactccgtggtccgtgtccgtaaaggcgaagaaaagccgacgctcagctat
ttgttgcctcagcgtttggaaacggaaacgcagcagttgcaagacgagcaaaccatcgaa
cgtaaacagcctgagcaaccagctttagcaacgttcagcatggttgaaatgccagaggaa
accacgccatcggtggccaaagcgacgcctgttgtagcaaaagccgcagaagaagctcaa
ccgggtctcattagccgtttcttcagtgccttaaaaggcgtttttgcttctgaaccaacc
gcaaaagcagcggataacgttgacgagaagaaagtcgaagaagagaaatctactgaaggc
caacgcactgaccgtcggaattcacgccgtcaaagtaataatcgccgtgaccgtggctct
cgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgaacagcgtgat
gatcagcgccgtaataagcgacaaaccgaagaagtggtcgtggaaactcgcgttgcggaa
aatgtggagaaagtcggttcagaagaacagccgcgccgtgaaccacgtgctgaacgtcag
cgtcgccgtcaggacgaacgccgccaagctccgacagaggaaaaaattcagccaactgtt
gatgagtcagatgacaatgcagccgagcaggataaaccgactcaggttatgcaacgtcgc
caacgccgtcagttaacgcagaaagttcgtgtccagtctgaagctcagcaggtcaccctc
tctgagaacacggcaccggttgctgaagcacctgaactggctcaagcttacgtcaagcca
aacgatgttgcggtagaccataacgagagcgataacgaacaaaacgatgcaaatcgtgcc
aatggcgaaaatggcggtatgccacgtcgttcacgtcgttcgcctcgccacctgcgcgtc
agcggccagcgccgtcgtcgctatcgtgatgagcgttacccgtcccagtcgccgatgcag
ttggagtttgccgctgcgtcaccggagatggcatcagggaaagtgtgggtcagctaccct
gtcgcacagccacagcaggctgaaacccaacagcaggaagagaacgtagcggctatcgaa
acaccgctgttaccagccgttgtcgacgttgccctgacggaacaagccgataccgttgaa
tccaacgcgattgaaaacgttgcgattactgaagcagtcgttcaggaagatgccgttgta
acagcaacagcacaatctgcggacgtcgttcaggacagcaatgtagcggatgtcgaagtg
agtgctgctgacgaagacactgtcgttgagcccatcaccgagaacacagcgatcgatgat
gccatcgctgcaattgccgtgagtgcggttgaagaagcaaaagctgttgaggttgatgat
actgcttcgacacaggtaactgaaaacgcacagacagttgaagctactgttgctgttgaa
actgctgttgctgaagaaaaaccggcagatgatatcgctgacacgaccgagacagcagat
gtgacagaaccggtttctaccccggtgatttccgcagtacaggaaatcagccagccacaa
atcgttcaggatgagcctgtagtcgctaccagcgcacagccggttgtggaagagcctgta
tcgagcgtagcaaaaccagcggctgttgttggtgttattgaacagcctagctataagctt
catgcaacggcaccaatgactaaagctccggctccggcatacaacgctgagcctgctcaa
cacagtgattgggtccgtccagcctatccgttctcaggaaaaggctcggcaggcggtcat
tccgcagttaaccagtcaactgcgccagcaaccaagcctacgccagttaacgagtaa
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