Pectobacterium peruviense: DUT67_08670
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Entry
DUT67_08670 CDS
T10302
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DUT67_08670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeu03400
]
DUT67_08670 (mfd)
Enzymes [BR:
ppeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DUT67_08670 (mfd)
DNA repair and recombination proteins [BR:
ppeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DUT67_08670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XDF56428
LinkDB
All DBs
Position
complement(1902348..1905800)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPPKAGEQRLLGELTGAACAVECAEIVERHTGLVVLIAPDMQNALRLRDEI
QQFTDQHVTTLSDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCP
HSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRR
DAEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGDIEQSAERFWQDI
QQRFESRRVDPMRPLLPSDSLWLRVDGLFSELKAWPRVQLKTDTLPEKAANVNLAYLPLP
DLAIQHQQKSPLDALRRFIEQFDGQIIFSVESEGRRETLQELLARIKLNPKLINTLEQAQ
GRGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGEAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILEETQEGKVDILIGTHKLLQSDVR
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDNLMVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIA
IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GDDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPD
VNTRLSLYKRIASAKNTAELDELKVELIDRFGLLPDASRHLLQIAALRQQAQALGIRRIE
GNEKGGFIEFGEQNRVDPSHLIGLLQRDPSTYRLDGPTRLKFMKDLSDRPQRIEFIGSLL
GNMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgttgccacccaaagcgggcgagcaacgcctgttg
ggcgagttaaccggcgcagcctgcgccgttgaatgtgcagagattgttgaacgccacacc
ggactggtggtgcttatcgcacccgatatgcaaaacgccctgcgattgcgcgatgaaatt
caacaatttactgaccagcacgtcaccaccctgtctgactgggaaacactgccttacgat
agtttttctccgcatcaggaaattatttcgactcgcctttccacgctctatcaattgccc
aacatgacgcgcggcgtcttgattctgccggtcaatacgctgatgcaacgtgtttgtccg
cacagtttcttgcacggtcatgcgctagtgttgaagaaaggccagcgcctctctcgcgac
aaactgcgctcacagttggaacaggcgggctaccgtagcgtcgatcaggtgatggagcat
ggcgaatatgccacgcgcggcgcgctgctggatctattcccgatggggagcgaagaaccc
taccgtatcgatttctttgacgatgaaatcgacagcctgcgcctgttcgatgtggataca
cagcgaacgctgaatgaagtgccgcacattaatctgctgcccgcacatgaattcccgacc
gacaaaaccgcaatcgaacttttccgcagccagtggcgtgaacagttcgaggtacggcgc
gatgctgagcacatttatcagcaggtcagcaaaggcgtctggcccgcagggatcgagtac
tggcagccgctattcttcagtgagccgctgccatcactgttcagctacttcccgaacaac
acgctgatcgttaacacgggcgatatcgagcaaagcgccgagcgtttctggcaggatatt
cagcagcgttttgaaagccgccgcgtcgatccgatgcgaccactgttgccatcggactca
ctctggctgcgtgtagacggtctgttctcggagctaaaagcgtggccgcgtgtacagttg
aaaaccgatacgctgccggaaaaagcggccaacgtgaatctggcctatctgccgctgccg
gatctggcgattcaacatcagcaaaaatcaccgctggatgcattgcgccgttttatcgaa
cagttcgacggtcagatcattttctccgtcgagagcgaaggccgccgcgaaacgctacaa
gaactgctggcacgcatcaaactgaaccctaagctcatcaatacgctagagcaggcacag
gggcgtggcacttatctgatcatcggtgccagcgaacacggctttatcgacaccctacgc
cagcgcgccttaatctgcgaaagcgatctgctgggtgagagggtcagccgtcgccgtcag
gatagtcgccgcacgattaataccgatacgctgatccgcaatctggcagagctgcggccg
ggacagcccgtcgttcatctcgaacacggcgttggtcgctatgtcgggctgaccacgctg
gaagcgggtggcatcaaagccgaatacctgattttgacctatgcgggtgaagacaagctg
tacgtccctgtttcttcgctgcatttgatcagccgctacgcgggtggtgccgatgagaat
gcgccgctgcataaactgggtggtgaagcctggtcgcgcgcgcggcaaaaagcggcggaa
agggtgcgtgatgtcgccgccgaactgctggatatttatgcccagcgtgcggcgaagagc
ggttttgcctttaaacatgacaaaacgcagtaccagcttttctgcgaaagtttccctttc
gaaaccacgcccgatcaggcgcaggccatcaacgccgtactgagcgacatgtgccaacct
ctggcgatggatcgtttggtgtgtggtgatgtcggctttggtaaaaccgaagtggcaatg
cgcgccgcgtttttagcggttgaaaaccataagcaggttgccgttctggtgccgacaacg
ctgttggcacagcagcattttgacaacttccgcgatcgctttgccaattggccagtgaag
attgagatgatctcccgcttccgcagcgcgcgtgaacaaacccagattcttgaggaaacg
caggaaggcaaagtcgatattctgatcggtacccataaactgttgcagagcgacgtgcgc
tggcgtgatttagggctgctgattgtcgacgaagaacaccgcttcggcgtgcgtcacaaa
gaacgcatcaaagcgatgcgagcggatgtcgatatcctgacgctgaccgctacgccgatt
ccacgaacgctcaatatggcaatgagtgggatgcgcgatctgtcgatcatcgccacgcct
ccagcccgccgcttagccgtgaaaacgttcgtgcgcgagtatgacaatctgatggtgcgt
gaagccatcctgcgtgaaattctgcgcggtggacaagtgtactatctgtataacgacgtg
gaaaatatcgagaaagccacccagcgattggcagagttggtgccagaagcacgtatcgct
atcggtcacggtcagatgcgcgaacgcgaactggaacgggtgatgaacgacttccatcac
cagcgttttaacgtgctggtgtgtaccaccatcatcgaaacggggatcgatatcccgagc
gccaacacgattatcattgagcgtgccgatcacttcggtctggcacaactgcaccagttg
cgcggtcgcgtggggcgttcccaccatcaagcttacgcctatctactgacgccgaatccc
aaagcgatgagcaccgacgcacagaaacgtctggaagcgatcgcgtcattggaagacctc
ggcgcaggttttgcgctggcaacgcacgatctggaaattcgcggcgcgggcgagttgctc
ggagacgatcagagtggacaaatgaccagcgtcggtttctcactgtatatggaactgtta
gaaagtgccgtagacgccctgaaagcaggccgagagccgtcgctggaggatttgatcaac
agccagactgacgtcgagctgcggttacccgctctactgcctgacgatttcatccccgac
gtcaatacgcgcctgtcgctctataaacgtattgccagtgcgaaaaacacggccgaactg
gatgagttgaaagtcgagctgatcgatcgcttcggtctccttcctgatgcaagccgccat
ctgttgcagatagctgccctgcgccagcaagcgcaagcgctgggcattcgccgtattgaa
ggcaacgaaaaaggcgggtttatcgaattcggcgagcaaaatcgcgtcgatccgtcccac
cttatcggcctgttgcagcgcgatccgagcacttatcgtctggatggtccgactcgtctg
aaatttatgaaggatttaagcgaccgtccgcaacgcatcgagtttatcggttcactgctg
gggaacatggcgcaacatacgctggcggcgtaa
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integrated database retrieval system
