Pectobacterium peruviense: DUT67_09585
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Entry
DUT67_09585 CDS
T10302
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppeu Pectobacterium peruviense
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppeu03019
]
DUT67_09585 (hrpA)
Enzymes [BR:
ppeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DUT67_09585 (hrpA)
Messenger RNA biogenesis [BR:
ppeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DUT67_09585 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
WHD_HA2
T2SSE
NACHT
nSTAND_NTPase5
PhoH
DUF6145
AAA_25
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
XDF56995
LinkDB
All DBs
Position
2108411..2112253
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIAAARQKVENRRANCPAIHYPEQLPV
SQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAARTVA
DRIAAELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVDVR
YRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIRDTAEALTRLDLPHTE
ILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIHLAENGHYHLTPQGQQLAQLPIDP
RLARMVLEARKTGCVREVMVITAALSIQDPRERPMDKKQASDEKHRRFADKDSDFLAFVN
LWDYLREQQKALSSSQFRRQCRMDFLNYLRVREWQDIYTQLRQVVKELGLPVNSEPADYL
SIHCALLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLFGLPIVAARKVNYSPI
DPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRRRDIMVDDETLFAFYD
QRLPHDVVSSRHFDQWWKGTSRDNADLLNFEKSMLIKDGAEKVSALDYPNFWHQGNLKLR
LSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIALIKSLPKPLRRNFVP
APNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQVPDHLKITFRVLDEKN
RTQREGKDLNALKDHLKDKVQQTLSSVVDDGLEQRGLHVWSFGSLPDCYEQKRGGYSVKA
YPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLDLIDDCIACSVDKLIASSGGPVWQEDAFQQLHEKVRAELNDTVVDIAKLVEQIL
TAVFTINKRLKGRVDMAMALALSDIKSQMSGLVFRGFVTENGWQRLPDVLRYLHAIERRL
EKLAQDVHRDRAQMLKVEQVQQAWQQWWNKLPAERRDDDDVKAVRWMLEELRVSYFAQQL
GTPFPISDKRVLQAMEQVEG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgcgatcggcaacgtttgcgccgccgtttgcagggcgccgcgaaggtcagcagc
ccacaagctcaggccgccatcgctcaggaaattgagggggaaatcgccgccgcacgccag
aaagtcgagaaccggcgggcaaactgtccggcaattcactatcctgaacaactgcccgtt
agccagaaaaaagacgagatactggaggcgctgcgtcatcatcaggtgattatcgtcgca
ggcgagacggggtcgggtaagaccacgcagttgccgaaaatttgtctcgaactggggcgc
ggtgtacatggtttgattggccacacgcagccacgccgtctggctgccagaaccgttgcc
gaccgcattgcggcagagttggaaacgccgctgggtggcagcgtcgggtataaagtccgt
tttaacgatcaggttggtgacaatacgctggtcaagttgatgaccgacggtattttgctg
gctgaaattcagcaggatcgcctgttgatgcagtacgacacgctgattatcgatgaagcg
cacgaacgcagcctgaatatcgatttcattatgggctatttgcgccaactgctgccaaag
cgccctgatttaaaagtgattattacgtcggctaccatcgatccgcagcgcttctcccgc
cattttaataatgcgccgatcattgaagtgtcgggccggacgtatccggtggatgtgcgc
tatcgtcccgtggtggaagacgctgacgacagcgagcgcgaccagctacaggcgattttt
gatgcagtcgatgagctgacgcgcgaagggccgggtgacattctggtcttcatgagcgga
gaacgtgaaattcgcgatacggcagaggcgttgacgcgcctggatttgccgcataccgag
attctcccgctgtacgcgcgcttgtcgaatcaggaacagaatcgcgtctttcagtcacat
cacggccgtcgcattgtgctggcgaccaacgtggcggaaacgtcgctaaccgtgccgggg
attcgctatgtgatcgacccgggtaccgcgcgtatcagccgctatagcttccgcaccaag
gtgcagcgtctgccgattgagcctgtctcgcaggcgtcggcgaatcagcgtaaagggcgc
tgtggtcgcgttgccgcaggggtgtgtatccgcctctattccgagcaggatttcctgtcg
cggcccgaatttaccgatcccgaaattcttcgcaccaatctggcctccgttattctgcaa
atgacgtcactcgggctcggtgatatcgccgcattcccgtttgttgaagcgccggataag
cgcaacattcaggacggcgtgcgcttgctggaggagctgggtgcgattcatctcgcggag
aatgggcactaccatctgacgccgcaagggcaacagttggcgcaattgccgatcgatccg
cgtttggcacgcatggtgctggaagcgcgtaaaacgggctgtgtgcgcgaagtcatggtg
atcactgccgcgctgtcgattcaagatccgcgtgaaaggccgatggataagaagcaggca
tcggatgaaaaacaccgccgctttgctgataaagactcggattttctggctttcgtcaat
ctgtgggactatctgcgtgagcagcagaaggcgctgtcttccagccagttccgtcgtcag
tgccgcatggatttccttaactacctgcgcgttcgcgaatggcaagatatctacacgcaa
ctgcgtcaggtggtgaaagaattggggctaccggtcaatagcgaaccggccgattacctg
agtattcactgtgcattgctcactggcttgctgtcgcatatcgggcagaaagatattgag
aaacaagagttcagcggcgcgcgtaacgcccgatttgctattttccctggatccgggtta
ttcaaaaaaccgcccaagtggacgatggtggccgaactggtggaaaccagccgcctgtgg
ggtcgtattgccgcgcgtattgagccggaatggatcgaaccgctggctcagcatctgatt
aaacggagctatagcgatcctcactgggagaaagcgcagggcacggtgatggcacaggag
aaggtgacactcttcgggctgccgattgtcgcggcacgtaaggtgaactatagcccaatc
gatccgacgctggcgcgtgagatgttcattcgtcacgcactggtggaaggtgattggcaa
acgcatcacgcctttttccgcgctaatctcaagctgctggctgaggtagaagatttagag
cataaatcgcgccgtcgcgacattatggtagacgacgaaacgctgtttgccttctacgat
cagcgtttgccgcatgatgttgtgtcgtcgcgtcattttgaccagtggtggaaagggacc
agccgcgataacgctgacctgcttaattttgaaaagagcatgttgatcaaagacggtgcg
gagaaagtgagcgcgctggactacccgaacttctggcatcagggcaatctcaaattgcgc
ctgtcctatcagtttgagccgggtgcggatgcggatggcgtgacggtacatattccgttg
cctatcctcaatcaggtgcgtgaagagggcttcgagtggcagattcccggcgtgcgtcgc
gaactgacgatcgcgctgattaaatcgttgcctaagccgttacgccgtaattttgtccct
gcgccgaattatgcagaggcgtttctggcgcgcactacgccattggaaaaagggttattg
gatgcgctggaacgtgaactgcggctgatgacgggcgtcacggtgccgcgtgaagcgtgg
cagtgggatcaggtgcccgatcatctgaaaatcactttccgcgtcctcgatgagaaaaac
aggacgcagcgggaaggtaaagacctgaacgcgctgaaagatcatctcaaggataaagtg
caacaaacgctatcatccgtggtggatgacggtttagagcaacgcggcctgcacgtctgg
agttttggttcgctgccggattgttatgaacagaagcgtggcggctattctgtcaaagcc
tatcccgcgttggttgatgaaaaggatagcgtagcgattcgcctgtttgacacgccgcac
cagcagcagcaggtaatgcgacaagggctgcgccgtctgttgttattgaatattccttcg
ccgatcaaatacctgcatgaaaaactgccgaataaggcgaaactcggcctctatttcaac
ccgtacggcaaagtgctggatctcatcgatgattgtatcgcctgttcggtggacaaactg
attgcgtcatccggtggccccgtttggcaggaagacgccttccagcagttgcatgagaaa
gtacgcgcagagctgaacgacacggtggttgatatcgcaaagctggttgagcaaatcctg
acggccgtcttcaccattaacaagcgtttgaaagggcgtgtcgatatggcgatggcgctg
gcgttaagtgatatcaaaagccagatgagcggcttggtgttccgcggctttgtgaccgaa
aacggctggcagcgcctgccggacgtgctgcgttatctgcacgcgatagagcgacgtttg
gagaagctggcgcaggatgtccaccgtgacagggcgcagatgctgaaagtggaacaggtt
cagcaggcgtggcaacagtggtggaataagctgcctgcggaacgacgtgacgacgacgat
gtgaaagcggtgcgttggatgcttgaggaactgcgcgtcagctattttgcccagcagcta
gggacgccgttcccgatctcggataagcgcgtattacaagcgatggagcaggtagaaggg
taa
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