Pectobacterium peruviense: DUT67_12295
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Entry
DUT67_12295 CDS
T10302
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DUT67_12295 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeu03400
]
DUT67_12295 (sbcB)
Enzymes [BR:
ppeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
DUT67_12295 (sbcB)
DNA repair and recombination proteins [BR:
ppeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
DUT67_12295 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DUT67_12295 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DUT67_12295 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XDF53040
LinkDB
All DBs
Position
2714396..2715823
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AA seq
475 aa
AA seq
DB search
MADKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPE
AVMITGITPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDALRACYALRPEGIIWPENDDGLPSFRLEHLTKANGIAHEQAHD
AMSDVYATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSN
TSWIVPLAWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALTADQSAVPLKLV
HINKCPVLAPANTLRPEDAARLGIDRQRCLDNLTLLRNNTDIREKVVALFAEAPAFAASD
DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD
REQQRWLQHRRAVFTPERLQSYLSELSDLYQLHEDDKEKMAQLKALYAYAQELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaacacaacccacttttttcatacacgactacgagacattcggcaaacac
ccagcgcgtgaccgccccgcgcagtttgcgggtgtccgtaccgatatggatttcaatatt
atcggtgagccgttagttatttattgtcgcccgaccgatgattacctgccggaaccagaa
gcggtgatgatcaccggaatcacaccgcagatcgcattggcaaaaggcgtcaatgaagcc
gagttcgcccgtcagatccacgaggcattcagcgtgcccggcacctgcattatgggctac
aacaatattcgctttgatgatgaagtcagccgcaatattttctatcgtaacttctacgat
ccttacgcttatagctggcagaacggtaattcccgttgggatttgctggatgcgctacgc
gcctgctatgccctgcggccagaaggcattatctggcccgaaaatgatgacggtttaccc
agtttccgccttgaacatctgacgaaagccaacggcatcgcgcacgagcaggcgcatgat
gcgatgtctgatgtttatgccaccatcgcgatggcgaaactgttcaagcaggcgcaaccc
aagcttttcgagtatctgtttccgctgcgcaataaaaacaaaatttccgcgctgatcgat
atcccacaaatgaagccgctcgttcacgtctccggtatgtttggcgcggcgagaagcaac
accagttggattgtgccgctcgcctggcatccggataaccgtaatgcggtcatcatgtgc
gatctggctggcgatatgacaccgctgctggagttagacagcgaggcattacgtgagcgg
ttatatacgcgccgagatgcgctgactgccgatcaaagcgcagttccgctcaagctggtg
cacatcaataaatgcccagtattagcgccagccaataccttacggccggaggatgcggca
aggttgggcatcgaccgtcaacgctgtctggataatctgacgctgctgcgtaacaacaca
gacatcagggaaaaagtggtagcgttgtttgccgaagcccccgcctttgccgcgtctgat
gatgtcgatttacggctttatgatggcttctttggcgatgccgaccgcatggcgatgaag
attattcaggagaccgcgccgcagaatctccccgcgctggatctcacgtttgccgataat
cgtctggaaccgctgttcttccgttatcgcgcccgcaatttccccggtacgctggatgac
cgcgagcaacagcgctggttgcaacatcggcgtgcggtatttacgccggaacgcttgcag
tcctatctgtcagaactcagcgacctgtatcagcttcatgaagacgataaagagaagatg
gcacagctcaaagcgctgtacgcctatgcgcaggaattggtgggataa
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