Pectobacterium peruviense: DUT67_17245
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Entry
DUT67_17245 CDS
T10302
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DUT67_17245 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeu03400
]
DUT67_17245 (recD)
Enzymes [BR:
ppeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DUT67_17245 (recD)
DNA repair and recombination proteins [BR:
ppeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DUT67_17245 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
PhoH
Herpes_Helicase
AAA_28
DEAD
UvrD_C
CbiA
T2SSE
MukB
FtsK_SpoIIIE
DUF87
AAA
AAA_17
SRP54
TrwB_AAD_bind
Flavi_DEAD
NTPase_1
TraI_hel_assoc_N
Zeta_toxin
ATPase
Motif
Other DBs
NCBI-ProteinID:
XDF53937
LinkDB
All DBs
Position
complement(3820364..3822235)
Genome browser
AA seq
623 aa
AA seq
DB search
MIALLEMAQAQRLLRALDIQFARMLADDTQPELLLAAACLSAHSGAGHVCLPLKNLQAQT
LFDGREPELAQQLITESGINTVAVWQQRLLASDAVSDGSKPTPLVLQGEKLYLQRSWQSE
GRVAQFIASERETVSVDEPAIRAVLDRLFPDTGEEIDWQKVAAAVALTRRIAVISGGPGT
GKTTTVAKLLAALIELNTGEALRIQLAAPTGKAAARLTESLGLALHRLAVDQRQRDAFPK
EATTLHRLLGAVTDSQRLRHHQGNPLHLDVLIVDEASMVDLPMMANVIAALPVQARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRARAQQLQRLTGCALDESGPEVQTTVSDSICLL
RRSYRFDPHSGIGQLALAVNGGDDARVRAVLNGEFADITCSPLAEAEEYQAMLAQCVEGY
RNYLDLIAAGATSDAVLHAFQRYRQLCALREGPFGVAGLNQRIEQALHQSGLIQRSRNPL
NRWYPGRPVMIGRNDAALGLFNGDIGIAMMGENGELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISAFINGTPLPK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgattgccttgcttgaaatggcgcaggcccagcggttactgcgcgctctggatatccag
tttgccagaatgttggcagatgatacgcagcctgaactgctgttggcggccgcctgcctg
agtgcacattcgggcgcggggcacgtgtgtctaccgttgaagaacttgcaggcgcagacg
ctatttgacggtcgtgaacctgaactggcgcaacagttgatcaccgagtcagggatcaac
acggttgctgtctggcagcaacgtttgctggcgtccgatgccgtaagcgacggtagcaaa
cctacgcctctggtgctgcaaggcgaaaaactttatttacagcgtagctggcagagtgaa
gggcgcgtggcgcagtttatcgccagcgagcgtgaaacggtgtcggtcgatgaacctgcg
attcgggcggtgctggatcggctgtttcctgatacgggcgaagagattgattggcaaaaa
gtggccgccgctgttgccctgacgcgccgtattgcggttatttccggtggaccggggacg
gggaaaacgacgacggttgctaagctgttggcggcgctgattgagctgaatacaggggag
gcgttacgtattcaattagctgcgcctaccggaaaggcagccgcgcggctaacggaatcg
ctggggttggcattgcaccgtctggcggtggatcaacgacagcgagatgcgtttccgaag
gaagcgacgacgctgcatcgccttttaggcgcagtgacggatagccagagactgcgtcac
catcagggaaatccgttgcatctggatgtgctgattgtggatgaggcttcgatggttgat
ttgccgatgatggcgaatgtgatcgccgcgcttccggtacaggccagaattatctttctg
ggcgatcgcgatcagctggcgtccgtcgaggcgggggcggtgttaggtgacatctgtcgt
tttgctgaggctggctatagccgtgcgcgggcgcagcagttgcagcggttaacgggctgc
gcactggatgagagcggccccgaagtgcagacaacggtcagtgacagtatttgcctgtta
cgtcggagctatcgctttgatccacattccggtattgggcaactggcgctggcggtgaac
ggcggcgatgatgcccgcgtgcgtgcggtgctgaacggcgagtttgccgatatcacctgt
agcccgttagccgaggctgaagagtatcaggcgatgctggcacagtgcgttgaagggtat
cgtaattatctcgatcttattgcagcgggagcgacatcggatgctgtgctgcatgctttc
cagcgttatcgccaactgtgtgcgttgcgcgaagggccgtttggcgtagcgggactcaat
cagcgcatcgagcaggctttgcatcagtctgggctgattcagcgcagtcgcaacccgctt
aaccgttggtatcccggtcgaccagtgatgattggacgtaatgatgccgcattgggtctg
ttcaatggcgatattggtatcgctatgatgggggaaaacggggaactgcgcgtgtttttc
cccttgccgaatggcgaaaccaaagatgttacgccaagccgtctgccgccgcatgaaacg
gcttatgcgatgacggtacataaatcgcagggatcggagttcgatcatacagcgttggta
ctgccgaaccactatttgccggtgctgacgcgggagttggtatataccgctatcacgcgt
gcgcgccagcgcctgtcactctataccgatgtccgaattctctgtcgggcggtgaaaacg
ccaacgcagcgctatagcgggttggaagagagaattagcgcgttcattaatggaacgccg
ttgcctaaataa
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