Pectobacterium peruviense: DUT67_19025
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Entry
DUT67_19025 CDS
T10302
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DUT67_19025 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppeu03021
]
DUT67_19025 (rpoD)
Transcription machinery [BR:
ppeu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DUT67_19025 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
XDF54259
LinkDB
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Position
4231717..4233552
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLIIGFVDPNAEEDIAPTA
THVGSELSSEEINDDDEEEDEEEEEDDNSIDPELAREKFTELREQYETTRQVIKAHGRSH
ALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKNF
VTMFTGNETNNSWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgttacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgctgacgatctgttgctagccgaaaacaccaatgatgccgatgaagatgcggcagag
gctgctgcgcaggttctatccagtgttgaatcggaaattggtcgcaccaccgatccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacgcgtgaaggcgagatcgat
atcgccaagcgtattgaagacggtatcaatcaggttcagtgctctgtcgcggagtatcct
gaagccattacctatctgctggaacaatacgatcgtgtcgaagccggcgaaagccgcctg
tccgatctgatcatcggtttcgtcgatcctaatgcggaagaggacattgcccctaccgcg
actcacgtcggttccgagctttcgagcgaagaaataaacgatgacgacgaggaagaagac
gaggaagaagaagaagacgataacagcatcgatcctgagctggcacgtgagaagttcacc
gaactgcgtgagcagtatgaaacgactcgccaggtgataaaagcccacggtcgtagccat
gcgctggcagcacaggaaatcctgaatctgtctgaagtcttcaaacagttccgtctggtg
ccgaaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgtccgtact
caggaacgtttgatcattaagttgtgcgttgaacagtgcaaaatgccgaagaaaaacttc
gtcacgatgttcactggcaatgaaaccaacaacagctggtttgccgcagcagtagcgatg
ggcaaaccttggtctgaaaaactgaatgatgttgaagaagacgtcacccgcagcctgcaa
aaactgcaacagatcgaagaagaaaccggtctgacgatcgagcaagttaaagacatcaac
cgccgtatgtcgattggtgaagcgaaagctcgccgcgccaagaaagaaatggtggaggcc
aacctgcgtttggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttcctc
gatctgattcaggaaggtaacatcggtctgatgaaagcggtagataagttcgaatatcgc
cgtggttacaaattctcgacctatgcgacctggtggatccgtcaagcgatcacccgttct
atcgccgatcaggcgcgtactatccgtattccggtacacatgattgagacgatcaacaaa
ctgaatcgtatctctcgtcagatgttgcaggaaatgggtcgcgagccaacgccggaagag
ctggctgaacgtatgttgatgccagaagacaagatccgcaaagtgctgaagatcgcgaaa
gagccgatttcaatggaaaccccgattggtgatgatgaagattcacatttgggcgatttc
atcgaagatacgacgctggagctgccgctggattccgcgacgtcggaaagcctgcgttct
gcgacacacgacgtactggctggcctgactgcgcgtgaagcgaaagtcctgcgcatgcgt
ttcggtatcgatatgaacaccgaccatacgctggaagaagtgggcaaacagtttgacgtt
acccgtgagcgtattcgccagatcgaagcgaaagcgctgcgtaaactgcgccacccaagc
cgttccgaagtgctgcgtagcttcctggatgattaa
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