Pectobacterium peruviense: DUT67_19770
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Entry
DUT67_19770 CDS
T10302
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppeu Pectobacterium peruviense
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppeu03016
]
DUT67_19770
Enzymes [BR:
ppeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DUT67_19770
Transfer RNA biogenesis [BR:
ppeu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DUT67_19770
Prokaryotic type
tRNA splicing ligases
DUT67_19770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XDF57101
LinkDB
All DBs
Position
complement(4390005..4391231)
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AA seq
408 aa
AA seq
DB search
MKMQDYDMMSPVNSAPVKMWTQGVPVEPEARDQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLMGLRSAIEQAVPHGRSVTRS
KRDVGSWQNPPQTVDAHWSLLEPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDD
VDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQQHIANLPDRNLAYFEEGSLHFDDYMEAV
DWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEDSFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcaggattacgacatgatgtcgccagtgaatagcgcaccggtaaaaatgtgg
acacaaggtgtacctgtggagccggaagcccgcgatcaactgctgaatacggccaaaatg
ccgtttatttttaaacatctggcggtgatgccggatgtgcatctgggaaaagggtcgacg
attggtagcgtgatccctactcgtggcgcgattatccccgctgcggtgggcgtggatatt
ggttgtgggatgatcgcggtgcgtacgtcactggttgccagcgacttgccagataacctg
atggggctacgtagcgcgattgaacaggcggtgccgcacggacgtagcgtcacgcgttct
aaacgcgatgtcggttcctggcagaatccgccacaaacggtggacgcgcactggtcactg
ctggaaccacgttttaagcgtttgacggataaatacccgcagttgctgaaaactaacaac
tatcagcatctgggaacgttagggacgggtaaccactttatcgaaatctgtctggatgac
gtggatcgcgtgtgggtgatgttgcatagcgggtcacgtggcgtggggaacgcgattgga
tcgctgttcatcaagctggcgcaggaagatatgcagcagcacatcgcgaatctgccggac
cgtaatctggcgtatttcgaggaaggaagcctgcactttgacgattacatggaagccgtc
gattgggcgcaggattttgcccgtcataaccgtgaagtgatgatgtcgcatacgctggcg
gcgctgtcccgtattgtgacgaagccgtttactactcagcaggaaggtgtgaactgccac
cataactacgtgcagcgcgaaacgcactttggtgaatcggtgctgatcacccgtaaaggt
gcggtgtcggcgcagaaaggtcagatggggatcattccgggttcgatgggggcgaagagc
ttcattgtgcgcggattggggaacgaggacagtttctgttcctgtagccacggcgcggga
agaaccatgagccgtaccgcggcgaaaaaacgttttaccgtggaagatcagatccgcgca
accgcgcacgttgagtgcagaaaagacagcgacgttatcgatgaaattccgatggcgtac
aaagatatcgataaggtgatggcagcacagtcatcgctggtagaaatcgtgcatacgctg
cgtcaggtggtgtgtgtaaaaggataa
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