Pseudomonas putida F1: Pput_0140
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Entry
Pput_0140 CDS
T00537
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03030
DNA replication
ppf03410
Base excision repair
ppf03420
Nucleotide excision repair
ppf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pput_0140
03410 Base excision repair
Pput_0140
03420 Nucleotide excision repair
Pput_0140
03440 Homologous recombination
Pput_0140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppf03032
]
Pput_0140
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_0140
Enzymes [BR:
ppf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pput_0140
DNA replication proteins [BR:
ppf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pput_0140
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Pput_0140
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pput_0140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
ABQ76315
UniProt:
A5VWQ5
LinkDB
All DBs
Position
141115..143862
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAEVQRDAAKAGDDV
GPAVEPAAKVEPKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVE
PHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPPIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQITLDKA
GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKV
QSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVL
DELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSQAAQLDVP
LLVEAGVGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctttatcgcgccttccac
gcgctgccaccgctgaccacgtccaagggcatgccgaccggtgcggtgaagggtgtgctg
aacatgctcaagagcctgcgcaagcaatatcccgacagcctgttcgccgtggtgttcgac
gccaagggcggcactttccgcgatgccatgttcgctgagtacaaggccaaccgccccagc
atgccggatgacctgcgggtacagatcgagccgctgcacgccagcgtcaaggcgctgggc
tacccgctgctgtgtgtggagggtgtcgaggctgacgacgtgatcggcaccctggcgcgc
agcagtgccgccctgggtcgcccggtgatcatctcgaccggtgacaaggacatggcgcag
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaagttcggcgtcggcccggaacacatcatcgacttcctggccctgatg
ggtgacaaggtcgacaacatcccgggcgtgccgggcgtgggcgaaaaaacggcagtgggg
ctgctgaccggcatcggcggcggtctcagcgacctttacgccaacctggacaaggtgcca
acgctggccattcgcggcgccaagaccttgccggccaagctggaggagcaccgcgacgcg
gcattcctgtcctacgagctggccaccatcaaggttgacgtgccgctggatgtcgaggtc
gaggcgctggtgtgcggtgaacctgaccgcgaggcgttgctggcgttgtacaccgagatg
gagttcaagagctgggtcgccgaagtgcagcgcgatgcggccaaggctggtgatgatgtc
ggcccggctgtggagcctgcggccaaggtcgagcccaaatacgaaaccatcctcgaccag
gcccgtttcgacgcctggctggagaagctgcgccaggcaccgctgttcgccttcgacacc
gagaccaccggcctggacgcccagcaggcgcagttggtcggcctgtccttcgctgtcgag
ccgcatgaagcggcctatgtgccgctggcccacgattatgaaggcgcgccggtccagctg
gaccgcgaggccgtgctgttggcgctgaagcccttgctggaggacccggccaaggccaag
gtcgggcagaacgccaagtacgacatcaacatcctcgccaatggctccccccctatcgag
atgcgcggtgtggcctatgacaccatgctcgagtcatacgtgctgaactccaccgccacc
cgtcatgacatggacagcctggcgcagaagtacctcgaccacaccacgatcgccttcgag
gacatcgccggcaagggtgccaagcagcttaccttcaaccagatcaccctggacaaggcc
ggcccctacgccgccgaagacgccgacatcaccctgcgcctgcaccatgcattacaggcc
cgcctggcacagacgccgagcgtgcaaccggtgctgatggatatcgagatgccgctggtg
ccggtgctggccaggatcgagcgccagggtgcgctggtcgatgccgagctgttgaaggta
cagagcggtgagctgggcgtgaagatggctgagctggagctgcgtgcctacgagctcgcc
ggtgagacgttcaacctcggctcgcccaagcagctgggcacgattctttacgacaagctg
ggcatgccggtgctgagcaagaccgccaagggccagccatccaccgccgaagcagtgctc
gacgaactggccgaacaaggctacccgctgccagaggtgctgatgcagtaccgcagcctg
agtaagctcaagagcacctacaccgacaagttaccggggcagatcaacccgcgcaccggg
cgcatccacacgtcctaccagcaggcggtggcggccaccggccggttgtcgtcgagcgac
ccgaacctgcagaacattccgatccgcaccgctgaagggcggcgtattcgccaggcgttc
atcgccagtccgggctacaagcttctggcggcggactattcacagatcgagctgcgcatc
atggcccacctggccaaggacgaaggcttgctgcatgccttccgcaatgacctggacgtg
caccgcgccacggcagccgaagtgttcggtgtggccctggaagacgtgaccaccgaccag
cgccgcagcgccaaggccatcaacttcggcctgatttacggcatgagcgcctttggcctg
gccaagcagatcggcgtcgaccgcaagcagtcacaggactacatcgaccgttattttgcc
cgctacccgggcgtgctggcctatatggagcgcacccgcgcccaggcggccgagcaaggc
tttgtcgaaaccctgtttggccgccggctgtacttgccagacatcaatgccaagaaccct
gccctgcgcaagggcgccgagcgcacggcgatcaacgccccgatgcagggtactgctgcc
gacatcatcaagcgggccatggtcaaagtagataactggttgagcgagagcgggctggat
gcccgggtgatccttcaggtgcacgacgaactggtgcttgaggtacgcgaggacctggtg
gagcaggtgaaagatgaaattcgccagcacatgagccaggccgcgcagctggatgtgccg
ctgcttgtcgaagcaggcgttggtgcgaattgggacgaagctcactga
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