Pseudomonas putida F1: Pput_0378
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Entry
Pput_0378 CDS
T00537
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppf
Pseudomonas putida F1
Pathway
ppf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pput_0378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppf03021
]
Pput_0378
Transcription machinery [BR:
ppf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pput_0378
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
MerR
HTH_24
HTH_17
HTH_11
Sigma70_r3
PhyR_sigma-like
HTH_29
HTH_28
HTH_3
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
ABQ76551
LinkDB
All DBs
Position
complement(438831..439349)
Genome browser
AA seq
172 aa
AA seq
DB search
MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLETPREP
RAFLAAVAKGLMFDHFRRTALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKL
SSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctgcacaaagcccacacgccgatctggtcggtgcgctgtaccgcgaccaccgc
ggctggctgctcgcctggctgcaacgcagcatggcctgccgccaacgtgccgaagacctg
agccaggacaccttcgtgcgcctgcttggtcgtgagcaactggagacaccccgcgaaccc
cgcgcgtttctggccgccgtggccaaggggctgatgttcgaccacttccgtcgcaccgcg
ctggaacaagcctacctggccgagctggcattgatccctgaagccgaacagccgtcgcca
gaaatgcagcacctgatccttgaagacctcaaagccatcgaccgcctgctcggcaagctg
tcgagcaaggctcgcgcggcgtttctgcacagccgcctggacggcatgggccatgccgag
attgccgagcgccttggcgtttcggtgtcgcgggtgcgccagtacatcgcccaagggatg
cgccagtgctatgtagccctgtatggggagccgacgtga
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