Pseudomonas putida F1: Pput_0481
Help
Entry
Pput_0481 CDS
T00537
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pput_0481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppf03021
]
Pput_0481
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_0481
Enzymes [BR:
ppf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pput_0481
Transcription machinery [BR:
ppf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pput_0481
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pput_0481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
CopK
Motif
Other DBs
NCBI-ProteinID:
ABQ76651
UniProt:
A5VXP1
LinkDB
All DBs
Position
556851..561050
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAGEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgttgaagttgccctggcgaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgtgctctac
ttcgagagctatgtcgttatcgacccgggcatgactaccctggaaaagggccagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgactttgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctttccaagcgt
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtgctgccgccggacctgcgtccgctggttccgctggatggtggccgtttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgccgtggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgtgttgactactcgggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgactcttcaccgtctgggtatccaggcgtttgaacccgta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtattacatgacccgtgaagcgatcaatgcc
aagggcgagggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgtcgacaccaccgtcggtcgtgcgctgctgttc
caggttgtgccagcaggtctgccgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctctaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgttatcttc
gccgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggtctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcactgaaaaccgctaactccggttacctgactcgtcgtctg
gtggacgttgcccaggatctggttgtgaccgagatcgactgcggcaccgatcagggcctg
gtgatgacgccacacatcgaaggcggcgacgttgtagagccgctgggtgagcgtgtattg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgttatcgttccggcc
ggtaccttggtcgacgagcagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcaactgcgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacctggctcgcggtcatcaggtgaacatcggtgaagctgtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcc
gcaagccgtacttcggctgccgacagcgtccaggtgaagaatggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgacggtaacctggttgccgtatcgcgttcgggt
gagttggcgattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgttgccaagtgg
gacccgcacactcacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgatgaactgactggcttgaccaacattgaa
gtactggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccagcaatcaagatg
gtcgatgcctcaggcaaggacctgtacctgccaggtaccgacgtacctgcccagtacttc
ctgccagccaacgcccttgtcggtgtggctgacggtgcgcagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacattaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcattcggtaaagagaccaagggcaagcgtcgcctggtaatcactccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcatgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggatgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgactcaggtgctggtagagaacgagcgtctcgctggcgaggacaagttcatctcc
aagttcacccgtgtgctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggctgtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggctggt
actggtctggcctaccacagcgagcgtaagcgtcgccgtgatgccgacaaaccgctgcgt
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaattccagcggtaactaa
DBGET
integrated database retrieval system
