Pseudomonas putida F1: Pput_1344
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Entry
Pput_1344 CDS
T00537
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppf
Pseudomonas putida F1
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppf03019
]
Pput_1344
Enzymes [BR:
ppf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pput_1344
Messenger RNA biogenesis [BR:
ppf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pput_1344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_25
ABC_tran
T2SSE
ResIII
NACHT
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABQ77504
UniProt:
A5W044
LinkDB
All DBs
Position
1509971..1513876
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPII
EVSGRTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPTDYQKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLEALDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEAWD
ESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKGEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAALAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgattgccgac
cgccatcgcctgcgccggcaactgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggagaaggtccaggcctcctgcgctcaggtcaccgcgcgtcagcagagc
gtgccgaccgtacgctacgacgacaacctgcccatcgccgccaagcgtgacgaaatcaag
aaggccctggccgaaaaccaggtgttggtgatcgccggcgagaccggctctggcaagacg
acccagttgccgaaaatctgcctggaacttggccgtggcagccatgggttgatcgcccat
acccagccacgcaggatcgcagcgcgtagcgtggccgcgcgagtcgccgaagagctgggc
acgcccttgggcgcgctggtcggctaccaggtgcgtttcgaagaccagagcgattccaac
accttggtcaagctgatgaccgacggcatcctcctggccgaaacccagcatgaccgcttc
cttgaacgctatgacacgatcatcgtcgacgaagcgcacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaaaacgttgctgcatcgccgaccggacctgaaactgatcatc
acctcggccaccatcgacctggagcgcttctccaggcacttcgacggtgcgccgatcatc
gaggtgtccgggcgcaccttcccggtggacacctggtaccgcccgctgaccagcgaacag
gacgaagagggcaaccagatcgaggatgacctcaccgtcgatcaggccatccttgccacc
ctcgacgagctggcgcagcacgagcgtagcgagggcaaggggccgggcgatgtgctgatc
ttcctgccgggcgagcgggaaatccgtgatgccgccgagatcctgcgcaaggcgcaactg
cgccataccgagattttgccgctgtacgcgcgcctgtcgccggccgagcagcagcggatc
ttccaaccgcacaccgggcgccgcgtggtgctggccaccaacgtcgccgaaacctcgctg
accgtgcctggcatccgctatgtgatcgacaccgggaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgcctgccgatcgaggcggtgtcacaggccagtgccaaccag
cgtaaaggccgttgcggccgggtcgagccgggcatttgcgtgcgtctctacagcgaagag
gacttcaacagccggccagcgtttaccgacccggagattctgcgcaccaacctggcggcg
gtgatcctgcagatgttgcacctgcgcctgggcgcaatcgatgccttcccgttcatcgag
ccgccggatggcaaagccatcagcgatggcttcaacctgttgcaggagctttcggcggtt
aaccgcgagaaccagctgacgccaattggccgccagctggcgcgcttgccgatcgacccg
aggctgggccggatgctgcttgaaggcgcgcgcctgggcagcctgcaggaagtgctgatc
gtcaccagtgcgctgtcggtgcaggacccgcgtgaacgccccccagaacgccagcaggcc
gccgaccaggcgcacgcacagtggaaggacgtggactcggacttcgcggcgctggtcaac
ctgtggcgcggcttcgaggaacaacgccaggcgctgactgccaacccgctgcgcaactgg
tgccgcaagcagttcctgaactacttgcggctgcgcgagtggcgcgatgctcatcgtcag
ttggcgctgatttgccgtgacctgcagctgacggtgaacaaggaaccgaccgattaccag
aagatgcacaaggcaatcctcagcgggctgctcagccagattggccagaagaccgaagag
ggcgactaccagggcgcccgccagcggcgcttctgggtgcatccatcgtcgggcctgggg
cgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgaaccgctggccggccacctgatcaag
aaaaaccatttcgagccgcactgggagaagaagcgcgggcaggtggtggcctacgagcag
atcacgctctacgggctgatcctggtcggccgtcggccggtgcactacggcccgatcgac
ccggcgacctcgcgcgagctgttcatccgtgaaggcctggtgggtggcgaaatccagtcg
cgggccaaatgcctggcggccaacaaacgcctgcttgaagcgctggacgagctggaagcc
aaggctcgccggcgtgacattctggctgacgaagaaacgctgtacgctttctacgaagca
cgcctgccggcggaaatccaccagacggcgaccttcgacagttggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaggacgtgctggcccgcgaggccagc
gaagtgaccgccgcacagtaccccgacagtatgcaggtgggcgatttgcgcctgccgctg
agctaccacttcgagcccggccacccccgcgatggtgtgacggtgcgggtgccggcgccg
ctgttgccgagcctgccgggcgagcgcctggagtggctggtgccgggcctgctggaggcc
aagtgcgtggcgctggtgcgcaacctgcccaaggccctgcgcaagaactttgtcccggtg
cctgacttcgtcaaggcttcgctggcgcgcatgaccttcggccaaggggcgctcccgcag
gccctgggccaggagctgctgcgcatgaccggtgcgcgtgtgtcggatgaggcctgggac
gagtcggtcaaccaggtcgaaggccacctgcgcatgaacatcgaagtggtcgatggccag
ggcaagttccttggcgaaggccgcgacctggcggaactgaccgcgcgctttgctgccgcc
agccaggctgccctggccgtgccgcgtgacgccaagggtgagcagccggtgcaggccaag
gccttcagcgaagtgaagcagaccgctcagcagaagatcgccggcctgtcgatgaccgtg
tacccggcgctggtggaagacaacggcactgtgcgtgaagggcgcttctcgacccaggcc
gaagccgagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgag
ccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatggggcgggtcgaggcgctggtcgaagacattctgctggccagcctggacagttgc
atccttgaaggcgaacaaccgttgccacgtgatggcgcggccttggccgcgctggctgaa
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcaaggcagaccctggaagtg
ctgaagctgtggcatggtctgcaaaaacgcttcaagggcaagatcgacctgagccaagcg
gtggcactgaacgacatcaagcagcagctaggcaacctggtgtacccgggcttcgtgcgc
gaaacgcctggggtgtggttcaaggagttgccgcgttacctcaaggcggttgaattgcgc
ctcgagaaactcggctcgcaagtacagaaggaccgggtgtggagcggcgagctggccaat
ttgtgggcgcagtacaaggcccgtgccgacaagcatgcccaggaaggtaagcgcgatgag
caactgactgtgtaccgttggtggctggaagaatatcgcgtgtcgctgtttgcccagcag
ttggggaccaaagtgccgatttctgacaagcgattgaacaaacaatggagtcaggtggaa
ggctaa
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