Pseudomonas putida F1: Pput_1395
Help
Entry
Pput_1395 CDS
T00537
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pput_1395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppf03019
]
Pput_1395
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_1395
Enzymes [BR:
ppf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pput_1395
Messenger RNA biogenesis [BR:
ppf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pput_1395
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pput_1395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
HTH_23
ResIII
GerE
HTH_29
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
ABQ77553
UniProt:
A5W093
LinkDB
All DBs
Position
1563385..1565532
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
SSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLDQ
AIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacatcttcggctacgacagtttccgtggg
cgccaggcagcgatcatcgaatgcgtggccaatggcggcgatgccttggtactgatgccc
accggtggcggcaaatcgctgtgtttccaggtgccggggctgctgcgcccgggcctgacg
gtggtggtatcgccactgatcgcgctgatggacgaccaggtcgccacccttgacgagctg
ggtgtgtctgcggccgccctgaactctaccctgacggcggagcagcagcgtgaactggcc
gggcgcctgcgccgtggtgaagtcaagatgctgtacctggcgccggaacgcctggtgcag
ccgcgcatgctcgacttcctgcgcgatctggacatctcgctgttcgccattgacgaggcc
cactgcgtttcgcaatgggggcacgatttccgcccagagtacctgcagctgggccagctg
gccgaactgtttccgcatgtgccgcgcattgcgcttaccgctacggccgacatgcgaacc
cgcgaggagatcgttcagcgcctgcacctgcagggcgccgagcgctttctgtcgagtttc
gaccggcccaacatcttctaccgcatcgtgcccaaggaggcaccgcgcaagcagttgatg
gccttcctcggcgaacgtcgtggcaacgcaggcatcgtctactgcctgtcgcgcaagaag
gtcgacgaaaccgccgccttcctctgcagtcaggggttccctgcgctgccgtatcacgcc
ggcctggccgccgagacacgtgcggccaaccagcaccgctttctcaacgaggaagggctg
atcatggtcgctaccattgctttcggcatgggtatcgacaagcccaacgtgcgcttcgtt
gctcacctcgacctgcccaaatcgcttgaggcctactaccaggaaaccggccgggccggc
cgtgacggcctgccctccgatgcctggatggcctacgggctgcaggacatggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccacaagcgcatcgagcagcacaag
ctggacgccatgctggcgctgtgcgaagaaacgcgctgccgccgccagtcgctgctggcc
tacttcgacgaaaccctcgaacaaccgtgcgggcactgcgacaactgtgtcgacaacatc
cagacctgggacgccaccgagccggcccgccaggcgctgtcggcggtgttccgcaccggc
cagcgctatggtgttggccacctggtcgatgtgctgttgggcaaggacaccgaaaaggtg
cgcaattttggccacgagaagctgtcggtattcggcgttggcaaaggcttggccgaggtc
gagtggcgttcactgttccgtcagctggtggcgcgcggcctggtcgatatcgacctggaa
ggctacggcggtctgcgcctgtccgacagctgccggccgctgctgcgcggcgaggtgacc
ttgcaactgcgccgtgatctcaaaccgcagaccacagccaaaacctcgtcgtccagcggc
ggcagcccggccagccagctggtgcgtgccgaagagcgcgatctgtgggaagcgctgcgt
accctgcgccgcaagctggccgaagaacacagtgtgccaccctacgtcatcttccccgac
tcgacactgctggagatgctgcgcagccagccggtcagcctcagcgacatggcccaggtc
agcggtgtgggggcgcgcaagttggagcgctacgggcaggcgttcctcgaagtgctgaac
agcagcggtggcaccgacgaggcaccgaaagtggtgctcgacctgcgtcacgaactggtc
agcctggcccgtgccggcatgaccccggcgcagatcgccgggcagctcaactgcagcgag
aagaatgtgtatagcctgctggccgaggcgctgggccgccaggagctgagtctggaccag
gccatcgacttgccggaagacctgatgatggaggtgcaggacgcctttcttgatggcgag
ggtgagctgccaccggtgtcggccattgccccgcagttcggggcgcgggtgccggagggc
gtactttattgcgtgcgcgcagcgctggcggcggaattcgaattgtaa
DBGET
integrated database retrieval system
