Pseudomonas putida F1: Pput_3809
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Entry
Pput_3809 CDS
T00537
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pput_3809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppf03019
]
Pput_3809
03009 Ribosome biogenesis [BR:
ppf03009
]
Pput_3809
Enzymes [BR:
ppf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pput_3809
Messenger RNA biogenesis [BR:
ppf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pput_3809
Ribosome biogenesis [BR:
ppf03009
]
Prokaryotic type
rRNA processing factors
Pput_3809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABQ79933
UniProt:
A5W723
LinkDB
All DBs
Position
4270489..4273761
Genome browser
AA seq
1090 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEPQAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAP
REERAPREERAPREERTPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREERVA
REERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAP
RPPREERQPRAAEEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRE
RQRNANGELIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQ
AERATAEVAAVAETDNSEAAQPVEQAEVVTKAEEASVAPAVEQPVTEPVAAAEATAEPVV
EMAPQPVAEDAPAAEPAVVAETVVTETPAEAPAVEAGEIEQAPAVVEVAPVAAQPAPVVE
AQPEVVAEPAPAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQEPALE
TADEHKPHHG
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggttccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaag
gccccagaaggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgtgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtaccgggt
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctggattacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagcgctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccatcgggtggctcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgctgttgaagagcgcgtg
cgtgaatgcctggaagccgaccgtgcccgcgtgcaggttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtacgtgctcaagtg
ccgatcccggtagccgctttcctgctgaacgaaaagcgtaactcgatcaccaagatcgag
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaaccctgaagtgctgaacaaccagtccagctacgaa
atcgccgccgccgaagctgaagaagcgccgcagccgaccgccacccgcaccctggtacgc
caggaagccgcagtgaagacggccccggcccgcgccaacgcaccggtaccggccgccgct
gaagagccccaggctgccgcgccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaaaggcctggtgaagtcgctggtgagcctgttcgccggcaaggacgagcctgccgcc
gcgccagtggctcccgccgccgaaaaaccggctgccgagcgcagcccgcgtaacgaagaa
cgccgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagaacgcaaa
ccgcgtgaagagcgtgccgagcgcgcaccgcgcgaggaacgcgccccacgcgaagaacgt
gcaccgcgtgaggaacgtgcaccgcgtgaagaacgtgcaccgcgtgaggaacgtgcccca
cgtgaagagcgtgcaccacgtgaagagcgtgcaccgcgtgaagaacgtactccgcgccag
ccacgcgaagaccgccgtagcaaccgcggcgaagagcgcgttcgcgagctgcgcgaaccg
ctggacgccaccccgccagccgaacgcgaagagcgccagccgcgtgaagaacgtgtagcc
cgcgaagagcgtgctccacgcgaagaacgcgcaccgcgtgaagaacgcgcaccgcgtgaa
gaacgtgctccacgtgaagaacgtgctccacgtgaagaacgcgcaccgcgtgaagaacgt
gctccacgtgaagagcgcgcacctcgggaagaacgcgctccacgcgaagaacgcgccccg
cgcccaccacgcgaagagcgccaaccacgcgctgccgaagaagcaaccgagcaggctgcc
gaactggccgaagagcaactgccaggcgaagagctgctgcaagacgagcaggaaggcacc
gatggcgagcgcccacgccgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgag
cgtcagcgcaatgccaatggcgagctgatcgacggcagtgaagaagaaggcagcgaagag
cagccacaacagcaccaggccaccgagctgggtgccgaactggctgccggccttgccgtg
acagctgctgtcgccagcagcaacatcagctccgatgcagaagcccaggccaaccagcag
gccgagcgtgccaccgccgaagtcgctgccgttgcagaaaccgacaacagcgaagccgcc
cagccggtcgagcaggccgaagtggtcaccaaagctgaagaagcgtccgtggccccagcg
gtcgagcagccggtcaccgagccagtggccgcagccgaggcaactgccgagcctgtggtc
gaaatggccccgcagcctgtcgctgaagatgcacctgctgctgagccggccgttgttgca
gaaaccgtggtcactgaaaccccagcagaagccccagcggtagaagccggtgagatcgaa
caggccccggccgtggtcgaagtcgctccggttgccgcacagcctgccccggttgtcgaa
gcccagccagaagtggtggccgagcctgcacctgcagtggtcgaacctgccactgtcatg
ctggccaacggccgcgcaccgaacgacccacgtgaagtgcgtcgccgcaagcgtgaggcc
gaggctgctgccaaagcggcacaggaagctgctgcagcctcccaggaaccagccttggaa
accgccgatgagcacaaacctcatcacggctga
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