Pseudomonas putida F1: Pput_4853
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Entry
Pput_4853 CDS
T00537
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pput_4853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppf03019
]
Pput_4853
Enzymes [BR:
ppf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pput_4853
Messenger RNA biogenesis [BR:
ppf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pput_4853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABQ80973
UniProt:
A5WA13
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All DBs
Position
5442932..5444815
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AA seq
627 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQRIADGDLMGFDASQVEAEKPETRERPQNNGRGGRNQQARGEGAKDSNGGR
KDKGKDKGKARQQAAAKPDDKEKSGDKQQQPRKPRDKKPRPQQASNNGVPKPPADRDPEE
FLDDEVDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPR
SGGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLD
RFPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tacacccagccgacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcacagacaggtacgggtaaaaccggcggcttcgccctgccgattctc
gagcgcctgttcccggccggccatcccgacaaatcgcagcgccatggcccgcgccagcct
cgcgtcctggtcctgacaccgacccgcgaactggcagcccaggtgcatgacagtttcaaa
gtctatgcccgtgacctgccactggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccattgccaaaggcgttgatgtgctggtcgcctgcccaggccgcctg
ctcgacctggccggccaaggcaaggtcgacctggcccacgtggaaatcctggtacttgat
gaagccgatcgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctcgcccgc
ctgccggccaagcggcagaacctgcttttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacaccacc
gtcgagcgtatcgagcagcgggtgtaccggctgcctgccagccacaagcgtgccctgctg
gcgcacctgatcaccttgggcgcctgggaacaggtgttggtgttcacccgaaccaagcac
ggtgccaaccgcctggccgagtacctggaaaagcaaggcctgaccgccgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggctttggccgacttcaaggccaacagcgtg
cgcgtactggtcgccaccgacatcgctgcccgcggcctggacatcgaccagttgccccac
gttgtcaacttcgagctgccgaatgtcgaggaagactacgtccaccgcattggccgtacc
ggccgtgccggtcgttcgggcgaagctatttccctggtcgcaccagatgaagaaaagctg
ctcaagagcatcgagcgggtgaccaagcagcgcatcgcggatggcgacctgatgggcttc
gacgccagccaggtcgaagccgagaagcctgaaacacgcgagcgcccgcaaaacaacggc
cgcggtggccgcaaccagcaagcccgcggcgaaggtgccaaagacagcaacggcggccgc
aaggacaaaggcaaggacaaaggcaaagccaggcagcaagctgcggccaagccggacgac
aaggaaaagagcggcgacaagcagcagcagccgcgcaagccgcgtgacaagaagccacgc
ccacagcaggccagcaataacggcgtgccgaaaccgccagcagaccgcgacccggaagag
ttcctggacgacgaggtcgataacttcggtaaccgcgccgactatgtcagtccgtaccag
ggcaaaaaccagggccgcaaccgtcgcccaggtggtgctggccaaggtcaggggcaaggc
aatggtcaacgcagcaacgctggcggccaaggccaagcccgcaatggcggccagccacgc
agtggtggcggagaaaaacgcccgccccgcgccaacaacggtggcggtgcccgtcgtgat
ggcggcggtggccgtggtcgccctgcgcgtgacgatgctgcccggcaagagccggccgtg
cgcaacccgcgtcagccggaaaaacagccagtgatcattcgcaaggagtccaaactggac
cgcttcccgacgcctgagcaactggatgacctgccaagccgcccacgcggtgagcgcccg
gcgctgctgacccgcaagggctga
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