Pseudomonas putida F1: Pput_5260
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Entry
Pput_5260 CDS
T00537
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03420
Nucleotide excision repair
ppf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pput_5260
03430 Mismatch repair
Pput_5260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_5260
Enzymes [BR:
ppf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pput_5260
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pput_5260
MMR (mismatch excision repair)
Other MMR factors
Pput_5260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
AAA_22
Viral_helicase1
DUF5681
Motif
Other DBs
NCBI-ProteinID:
ABQ81378
UniProt:
A5WB68
LinkDB
All DBs
Position
5905963..5908149
Genome browser
AA seq
728 aa
AA seq
DB search
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH
ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagacgacctctctctcctgctgaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctcgggcgtcaactggtgcttgccggcgccggttccggtaaaacccgc
gtgctggtacaccgcatcgcctggctgatccaggtcgagcaggcatcaccgcactcgatc
ctgtcggtgacgttcaccaacaaggccgcagcagaaatgcgccagcggatcgagcaactg
ttgggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcccatcgcctg
ttgcgggcccactggcaggaagcgcggctggtgcagaacttccagatcctcgacagcgac
gaccagcagcgcctgatcaagcgggtcatgcgcgagttgggcctggacgagcagaagtgg
ccggcacgccaggcccagtggttcatcaacgggcagaaagacgaaggcctgcgcccgcag
catatccaggcggggggcgacctgttcctggcgaccatgcgcgaggtctatacggcctac
gagcaggcgtgcgagcgcgccggtgtcatcgatttctccgaactgctgcttcgcgccctg
gacctgtggcgtgaccacccgggcctgctggagcactatcaacgacgcttccgccacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggttgcgcctgctggca
cgcggtggcgacagcctgatggcggtaggcgatgacgaccagtcgatctacggctggcgc
ggcgccaagatcgaaaacatccaccagtacaccgccgacttccccgacgccgaaatgatc
cgcctggagcagaactaccgctccaccggcggcatcctcaaggcggccaacgcgctgatc
gccaacaacagcgggcgcctgggcaaggaactgtggaccgacatgggcgaaggcgaacca
ctgaccctgtacgcggcctacaacgagcacgacgaagcgcgctatgtcgtggaaaccatc
gagagcctggtcaagcagggtaatgcgcgcaacgagatcgccatcctgtaccgttccaac
gcccagtcgcgcgtgctggaagaggccctgctgcgcgaacgcatcccctaccgcatctat
ggcggccagcgcttcttcgagcgcgccgaaatcaagaatgccatggcttacctgcgcctg
atcgaagggcgtggcaacgatgccgctctggagcgggtgatcaacgtgccgccgcgcggt
attggcgaaaaaaccgtcgaagccatccgcgagcacgcccgtcacagccagctgtccatg
tgggaggccatgtgccagctgctcgccgccaaagccctgaagggccgcgccgccagtgcc
ctgggggcctttatcgagctgatcgaggggctggccgccaaggttgtggacatgccgctg
cataccatgacccagaccaccatcgaacagtccggcctgatcacctatcaccaggaagaa
aaaggtgaaaagggccaggcacgcgtagaaaaccttgaggaactggtcagtgcggcacgc
aacttcgagtccaccgacgaagacgccgacctgtccccgctctcggccttccttggccac
gcctcactcgaagctggcgatactcaggctgacgagcatgaagacagcatccagctgatg
accctgcacagcgccaaaggcctggagttcccctatgtgttcctggtgggcatggaagaa
ggcttgttcccgcacaagatgagcctggaagaacccggccgtctggaagaggaacgacgc
ctggcctatgtaggcatcacccgcgccatgcgccagctggtcatgacctatgccgaaaca
cgccgcctttatggcagcgagacttacaacaaggtgtcgcgtttcgtgcgtgaaattccg
gccggcctggttcaggaagtacgcctgtccaacagtgtcagccgcccgttcggcggggcc
aagacggccaccaacagcaacctgttcgccaatgccagcattccgcagaccgcgttcaac
cttggccagcgtgtgcagcatgcggtattcggcgaaggcgtaatcctcaacttcgagggt
tctggcgctcaggcgcgggtgcaggtgaattttgccgaaggtagcaaatggctgatgctg
gggtatgccaagctcgaggctgtctaa
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