Pseudomonas putida GB-1: PputGB1_0138
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Entry
PputGB1_0138 CDS
T00650
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03030
DNA replication
ppg03410
Base excision repair
ppg03420
Nucleotide excision repair
ppg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputGB1_0138
03410 Base excision repair
PputGB1_0138
03420 Nucleotide excision repair
PputGB1_0138
03440 Homologous recombination
PputGB1_0138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppg03032
]
PputGB1_0138
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_0138
Enzymes [BR:
ppg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputGB1_0138
DNA replication proteins [BR:
ppg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PputGB1_0138
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PputGB1_0138
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputGB1_0138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
ABY96054
UniProt:
B0KG03
LinkDB
All DBs
Position
139911..142658
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SAAAKGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDVEVDALVCGEPDREALQALYTEMEFKSWVAEVQREAARAGNEV
APVEEPAAKVEPTYETILDQARFEAWLDKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVA
PHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDKA
GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHV
QSGELGVKMGELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVL
DELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQAAQLDVP
LLVEAGIGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctgtaccgcgcctttcac
gcgctgccgccgctgaccacgtccaagggcatgccgaccggtgcggtgaagggtgtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgccgtggtgttcgac
gccaagggcggcactttccgcgatgccatgttcgccgaatacaaggccaaccgccccagc
atgccggacgacctgcgggtgcaggtcgagccgctgcatgccagcgtgaaggcgctgggc
tatccgttactgtgcgtcgagggtgtagaggccgacgacgtcatcggcaccctggcgcgc
agtgctgccgcgaagggtcgcccggtgatcatttcgaccggtgacaaggacatggctcag
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaaatttggcgtcggcccggaacatatcatcgacttcctggccctgatg
ggtgacaaggtcgacaacattcccggcgtaccgggcgtgggcgaaaaaaccgccgtgggc
ctgctgaccggtatcggcggcggcctcagcgatttgtacgcgaacctggacaaggtaccg
gcactggccattcgtggcgccaagaccttgccggccaagcttgaagagcaccgggacgca
gcgttcctgtcctacgagctggccaccatcaaggtcgatgtgccgctggatgtcgaagtg
gatgcgctggtgtgcggtgagcctgatcgcgaagcgttgcaggcgctgtacaccgagatg
gagttcaagagctgggttgccgaagtgcagcgtgaggccgcaagggcgggtaatgaggtt
gcgccggtcgaagagccggcggccaaggttgagccgacgtacgaaaccattcttgaccag
gcccgtttcgaggcctggctggacaagctgcgtcaggcgccgctgttcgccttcgatacc
gaaacaaccggcctggatgcccagaaggcgcagctggttggcctgtctttcgctgttgcg
ccccatgaggcggcttatgtgccgctggcccacgattacgaaggcgcgccagcccaactg
gaccgcgacgccgtgctgctggcgctgaaaccactgctggaagacccggccaaggccaag
gtcgggcagaacgcgaagtatgacatcaacatcctcgccaatggctcgcccgccatcgag
atgcgtggcgtggcctacgacaccatgctcgagtcgtatgtgctgaactccaccgccacc
cgtcatgacatggacagcctggcgcagaagtacctcgaccacaccaccatcgccttcgag
gatatcgccggcaagggcgccaagcagctcactttcaaccagatcaacctggacaaggcc
ggcccctacgcggccgaagacgccgacatcaccctgcgcctgcaccaggcgctgcaggca
cgcctggcacagacgccaagcgtgcagccggtgctgatggacatcgagatgccgctggtg
ccagtgctggccaagatcgagcgccagggcgcgctggtcgatgccgcgctgttgcacgtc
caaagcggcgaactgggcgtgaagatgggcgaactggagcaacgtgcctacgagctggcc
ggcgaggaattcaacctcggctcgcccaagcagttgggcgcgatcctttacgacaagctt
ggcatgccggtgctgagcaagaccgccaagggccagccctccaccgccgaagcggtgctc
gatgagctggccttgctcggttacccactgcctgaggtactgatgcagtaccgcagcctg
agcaagctcaaaagcacctacacagacaagctgccgggccagatcaacccccgcaccggg
cgtatccacacctcctaccagcaggctgtggcggccactggccggctgtcgtcgagcgac
cctaacctgcagaacatcccgatccgtaccgccgaaggccggcgcatccgccaggcgttc
atcgccagcccaggatacaaactgctggcggcggactactcgcagatcgagttgcgcatc
atggcccacctggccaaggacgaaggcttgctgcacgctttccgcaacgacctcgacgtg
caccgcgccacggcggcggaagtgttcggtgtggccttgcaagacgtcaccaccgaccaa
cgtcgcaaggccaaggccatcaacttcggcctgatctacggcatgagcgcctttggtttg
gccaagcagatcggcgtcgaccgcaagcagtcgcaggattacatcgaccgctacttcgcc
cgctacccaggcgtgctggcctacatggaacgcacccgcgctcaggcggccgagcaaggt
tttgtcgaaaccctgttcggccgtcgtctgtacctgccggacatcaacgccaagaacccc
gccctgcgcaaaggcgccgagcgtacggcgatcaacgcgccgatgcagggcaccgcggcc
gacatcatcaagcgggccatggtcaatgtggataactggctgagcgagagcgggctggat
gcccgagtgatcctgcaggtacacgacgaactggtactcgaggtacgcgaggacctggtt
cagcaggtgaaagatgaaattcgccagcacatgagccaggcagcgcagctggatgtaccg
ctgctggtggaggcaggaattggtgcgaattgggacgaagctcactga
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