Pseudomonas putida GB-1: PputGB1_0180
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Entry
PputGB1_0180 CDS
T00650
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PputGB1_0180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppg03021
]
PputGB1_0180
Transcription machinery [BR:
ppg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PputGB1_0180
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
HTH_23
PhyR_sigma-like
Sigma70_r4
HTH_11
GerE
HTH_29
HTH_24
MPAB_Lcp_cat
HTH_Tnp_ISL3
HTH_40
HTH_31
HTH_7
HTH_28
HTH_Tnp_4
HTH_Crp_2
PCI
HTH_36
PapC_N
HTH_17
HTH_10
DUF6362
TnsD
Motif
Other DBs
NCBI-ProteinID:
ABY96095
LinkDB
All DBs
Position
complement(198050..198553)
Genome browser
AA seq
167 aa
AA seq
DB search
MPSNDCVQTLYSDHHGWLHAWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNAPRAFLR
TVARGLVIDHWRREELHRAYLEALAHVPEALAPSAETRELLLELLERIARMLDGLKPKVR
RAFLLAQCEGLKHQAIAEQLGISVRTVERYIADALYHCYVLHYQDEC
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcaacgactgcgtgcaaacgctctacagtgaccaccacggctggctgcatgcc
tggctgcgcagcaagctaggcaatgcggccgatgccgccgacctggcccaggacaccttc
gtacgcttgctacagcgccgtgaacaattgcaactgaatgcacccagggccttcctgcgc
acggtagcgcgcgggttggtgatcgatcactggcggcgcgaggaactgcacagggcttac
ctggaggctttggcgcatgtgccggaagcattggccccctctgccgaaacccgcgagctg
ctactggagttgcttgagcgcattgcacgcatgctcgacggcctcaaacccaaggtacgt
cgcgcattcctcctggctcaatgcgaggggctgaagcaccaggccatcgccgaacagctg
gggatctcggtgcgcaccgtagaacgctacattgccgatgcgctctatcactgctacgtg
ctgcactaccaggacgagtgctga
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integrated database retrieval system
