Pseudomonas putida GB-1: PputGB1_0508
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Entry
PputGB1_0508 CDS
T00650
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PputGB1_0508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppg03021
]
PputGB1_0508
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_0508
Enzymes [BR:
ppg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PputGB1_0508
Transcription machinery [BR:
ppg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PputGB1_0508
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PputGB1_0508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
ABY96419
UniProt:
B0KK91
LinkDB
All DBs
Position
580637..581638
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgactccccgccacattgatgtgcaggtagtcagt
ccgacccgcgccaagatcacgctcgagcctctcgagcgtggctttggccacaccctgggc
aacgcgctgcgccgcatcctgttgtcctctatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccacgagtactccgcgatcgaaggtgttcaggaagacgtaattgaa
atcctgttgaacctgaaaggcctggctatcaaactgcacggtcgtgacgaagttacgctg
accttgtcgaaaaagggttcgggggtggttaccgctgccgatattcagctggatcacgat
gtcgagatcgtcaaccccgatcacgtaatcgcgaacctggcgtcgaatggcgccctgaac
atgaagctcaccgtagctcgtggtcgtggttacgagccggccgactcccgtcaaaccgac
gaagacgaaagccgtagcattggccgtctgcagttggacgcttcgttcagcccggtgcgt
cgtatcgcctatgtggtcgaaaacgcccgtgttgaacagcgtaccaacctggacaaactg
gtcattgatctggaaaccaacggcaccctggatcctgaagaggctatccgccgcgctgcg
accatcctgcaacagcagttggccgcgttcgtcgacctcaaaggtgacagcgagcctgtc
gtagtcgagcaggaagacgagatcgatccgatcctgctgcgtccggttgacgacctggaa
ctgactgtacgttcggccaactgcctcaaggcggagaacatctactacatcggcgacctg
attcagcgtaccgaagtagagctgttgaagactcctaacctgggcaagaagtccctgact
gaaatcaaggacgtgctggcctctcgtggtctgtctctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaagacgacaaggcgaccgcctga
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