Pseudomonas putida GB-1: PputGB1_0602
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Entry
PputGB1_0602 CDS
T00650
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppg
Pseudomonas putida GB-1
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppg03000
]
PputGB1_0602
Transcription factors [BR:
ppg03000
]
Prokaryotic type
Helix-turn-helix
Other families
PputGB1_0602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_23
HTH_17
HTH_30
AbiEi_4
AAA_2
AAA_5
HTH_29
AAA_16
HTH_50
HVO_A0261_N
HTH_28
RWP-RK
HTH_7
HTH_22
IclR_C
Motif
Other DBs
NCBI-ProteinID:
ABY96513
UniProt:
B0KLA9
LinkDB
All DBs
Position
680216..682069
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AA seq
617 aa
AA seq
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MLAANSRAHVDCVSRVLKNADRLPQAPVPALILDSWRRSMELYRLDPGSQQGPRILSQSL
LNECRERAELFLRIASDAVARLHERVRGADYCVLLTDAQGRTIDYRVESAIRNDCRKAGL
YLGTCWSEGEEGTCGVAAVLTSKAPVTVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVD
VSALQSPDDRRSQHLIRQLVEQTAREIENAFFMHSAQGHWVMRAHGTPGYVESQPDYLLA
WDADGRLQAINSLARQRLVERLGRLPEHIGELFDLDQLRRVSATSAQRLPGLGGLYGRVS
APQRRERAQPLHQAQDARIEQHLRLATRVKDCNLAVLVLGETGAGKEVFARQLHQQSLRR
DGPFVTLNCAAIPESLIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDEIGDMPLH
LQTRLLRVLAEGEVAPLGAARRERVDIQVICATHRDLATMVADGRFREDLYFRLANARFE
LPPLREREDRLGLIHQLLAEEAQACGVEVVLADAALQALLVYRWPGNLRQLRQVLRYACA
VSEGGQLHLQDLPHEVRGDAVVSAESGVSCPARQLLLDALIRHRWKPADAARALGISRAT
LYRRVHEHRIEMPRMKG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccgcgaactcccgagcccacgtcgactgcgtcagcagggtgctgaagaatgcc
gatcgcctgccacaggcgccggttcctgcgctgatcctcgactcatggcgccgctccatg
gagctgtaccgcctcgaccctgggtcccagcaggggccgcgtatcctttcccaaagcctg
ctcaacgaatgccgcgaacgcgccgagctgttcctgcgtatcgccagcgatgccgtggca
cgcctgcatgagcgggtgcgcggcgcagactactgcgtgctgctgaccgacgcccagggg
cgcaccatcgattatcgggtcgagtcagccatccgcaacgactgccgcaaagccgggctg
tacttgggtacctgctggtcagagggcgaggagggcacctgtggcgtggcggcggtgctg
accagcaaggccccggtcacggtgcacaagcgcgatcactttcgcgccgccttcatcggc
cttacctgcactgccgcaccggtattcgacccgttgggcgagcttttgggtgtggtggat
gtatcagccttgcagtcgccagacgatcggcgcagccagcacctgatccggcaactggtc
gagcagacggcccgcgagatcgaaaacgccttcttcatgcacagtgcccagggccattgg
gtgatgcgtgcccatggcacgccaggttatgtggaaagccagcccgattacctgctggcc
tgggatgccgatggccgcttgcaggccatcaacagcctggcgcggcaacgcttggtggag
cgcttggggcgtttgcccgagcatattggcgaactgttcgacctagaccagttgcgccgg
gtgagcgcgacttcggcccagcgcctgcccggcttgggtggtttgtatggccgggtcagc
gcgccgcaacgacgcgagcgcgcgcagccgttgcatcaggcccaggacgcgcggatcgag
cagcacctgcggttggccacgcgggtcaaggactgcaacctggcggtgctggtgctaggc
gaaaccggtgctggcaaagaggtctttgcccgccagttgcaccagcaaagcctgcgccgc
gacggcccgttcgtcacactgaactgcgcggccatcccggaaagcctgatcgagagcgag
ttgttcggctatgtcgcaggagcctttaccggggcttccagcaaaggcatgcaggggctg
ttgcagcaggccgatggcggtacgctgttcctggacgaaatcggcgatatgccgttgcac
ctgcaaacccgcttgttgcgggtgctggccgagggcgaagtggcgccgctgggtgctgca
cggcgcgagcgggtggacattcaggtgatctgtgccactcaccgcgacctggcaaccatg
gtggcggacgggcgttttcgtgaggatctgtatttccgcctggccaatgcccggttcgag
ctgccgccgctgcgtgagcgcgaggaccgcttggggttgattcaccagttgctggccgaa
gaagcccaggcctgtggagtggaggtggtactggccgatgctgcgctgcaggcgttgctg
gtttatcgctggccgggcaatttgcgccagctgcggcaggtgttgcgctatgcctgtgcg
gtgagcgagggcgggcagttgcacttgcaggacctgccgcatgaggttcgcggtgacgcg
gttgtttcggctgaaagcggcgtatcgtgcccggcccggcagttgctgctggatgcattg
atccgtcatcgctggaagccagcggatgcggcgcgggctttggggatctcgcgggcgacc
ctgtatcgacgggtgcatgagcatcgtatcgagatgccgcggatgaaggggtag
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