Pseudomonas putida GB-1: PputGB1_1721
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Entry
PputGB1_1721 CDS
T00650
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03030
DNA replication
ppg03430
Mismatch repair
ppg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputGB1_1721
03430 Mismatch repair
PputGB1_1721
03440 Homologous recombination
PputGB1_1721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppg03032
]
PputGB1_1721
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_1721
Enzymes [BR:
ppg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputGB1_1721
DNA replication proteins [BR:
ppg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PputGB1_1721
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PputGB1_1721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ABY97624
UniProt:
B0KHB9
LinkDB
All DBs
Position
complement(1944892..1945503)
Genome browser
AA seq
203 aa
AA seq
DB search
MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIP
NEVAVIHGITNELALEHGIPEALAIEGFLNIWNQAGLRVAHNVSFDDRIMRIALKRFQDA
WVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDLVGGH
RARPDAEACARVYFALQAFQSVA
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattgatctgcgtcttcgacaccgaaaccaccggcttcccgaacttcaaagcc
cccagcgaccacccagaccaaccccacatcgtcgatatctgcgccctgctctacaccccc
gagggcgagctggtcgacagcttcgaagcaatggtccgccccgatggctggagcatcccc
aacgaagtcgccgtgatccacggcatcaccaacgaactcgccctggagcacggcattcct
gaggccctggccatcgaaggcttcttgaacatctggaaccaggccggcctgcgcgtggcg
cacaacgtgtcgttcgacgaccgcatcatgcgcatcgccctcaagcgcttccaggatgcc
tgggtggccgaaaccttccgcgattcgcccaagttctgcacctgccagtccaccaccagc
atcgtgaagtgcccgcccaccgagaagatgatcgccgccggccgcggcaagcagcacaag
ccgccaaccgtgaccgaagcgttgaagttcttcaccggcgaagacctggtcggcggtcac
cgcgcccgtcccgacgccgaggcctgcgcccgcgtgtacttcgcccttcaagccttccag
tcggtcgcctaa
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