Pseudomonas putida GB-1: PputGB1_3546
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Entry
PputGB1_3546 CDS
T00650
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppg
Pseudomonas putida GB-1
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppg03032
]
PputGB1_3546
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_3546
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PputGB1_3546
DNA replication proteins [BR:
ppg03032
]
Prokaryotic type
DNA Topoisomerases
PputGB1_3546
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PputGB1_3546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Metal_resist
Motif
Other DBs
NCBI-ProteinID:
ABY99437
UniProt:
B0KLQ9
LinkDB
All DBs
Position
3948011..3949033
Genome browser
AA seq
340 aa
AA seq
DB search
MLDCPLPRTLHYVDDSQPGMTRRRWRDRFIYLDADGQRVRDSDTLARIAALVIPPAYTDV
WICADPQGHLQATGRDARGRKQYRYHAQWRELRDQHKYGRMLAFAQALPKLRAQLEAHLA
RPGLDREKVMALVVSLLDHTLIRIGNQRYLRDNQSYGLTTLRNRHVQVKGSTIRFQFRGK
RGVEHNVTLNDRRLASLLKRCMELPGQTLFQYLDEDGQRHSVGSSEVNQFLQQLTGADFT
AKDYRTWAGSSLALDLLKPLAWEPESEAKRQVAAIVRQVATRLGNTPAVCRRCYIHPAVL
EHYAQGRLAQLPKSRVRKGLDPEEVALLLFLQVLEEQDGD
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgctcgactgccccctgccacgcaccctgcactacgttgacgacagccagccaggcatg
acccggcgacgctggcgcgaccgtttcatctacctggatgccgacggccagcgggtgcgc
gacagcgacaccttggcgcgcatcgccgcgctggtgattcccccggcctacaccgatgta
tggatctgcgccgacccgcagggccacctgcaggccaccggtcgcgatgcccgtggccgc
aagcagtaccgctatcacgcgcagtggcgcgaactgcgtgaccaacacaagtatgggcgc
atgctggcctttgcccaggcactaccaaagctgcgcgcgcaactggaagcccacctggcg
cggccagggctggaccgggaaaaggtcatggcattggtggtgagcctgctggaccacacc
ctgatccgcattggtaaccagcgttacctgcgcgacaaccagtcttatggcctgacgacc
ctgcgtaaccgccatgtgcaggtcaaaggcagcaccattcgctttcaatttcgcggcaag
cgtggcgtcgaacacaacgtcaccctcaacgaccgacgcctggccagcctgctcaaacgc
tgcatggagctgcctggccagacactgtttcaatacctggacgaagacggccagcgccac
agcgtaggctccagcgaggtcaaccagttcctgcagcagttgaccggcgcagacttcacc
gccaaggactaccgcacctgggccggcagcagcctggcgttggacctgctcaaacccctg
gcctgggaaccggagagtgaagccaaacgccaggtcgccgcgatagtccgccaggtcgcc
acgcgcctgggcaatacgccggcagtgtgcagacgctgctacatccatccggcagtgctg
gagcactatgcccagggacgtctggcccaattgcccaagagccgcgtgcgcaaaggcctg
gaccccgaggaagtggccttgctgctgtttcttcaggtactcgaggaacaggacggcgat
taa
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