Pseudomonas putida GB-1: PputGB1_4022
Help
Entry
PputGB1_4022 CDS
T00650
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputGB1_4022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_4022
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_4022
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputGB1_4022
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputGB1_4022
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PputGB1_4022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
HTH_23
ResIII
GerE
HTH_29
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
ABY99912
UniProt:
B0KRY9
LinkDB
All DBs
Position
complement(4472764..4474911)
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVSAAALNSTLSAEQQRELAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCQQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDNEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKASSSSGGSPASQLVRAEERELWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTEEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLEQ
AIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacatcttcggctacgacagtttccgtggg
cgccaggcagcgatcatcgaatgcgtggccaatggcggcgatgccctggtgctgatgccc
accggcggcggcaagtcgttgtgctttcaggtgccggggctgctgcgtccgggcctgacg
gtggtggtctcgccactgatcgcgttgatggacgaccaggtcgccacgcttgacgaactg
ggcgtttcggcggccgcgctgaattccaccctgagcgcggaacagcagcgtgaactggcc
gggcgcctgcgccgtggcgaggtaaaaatgctctacctggcgccggagcgcctggtgcag
ccgcgcatgctggattttctgcgtgacctggacatctcgctgttcgccatcgacgaggcc
cactgcgtttcgcaatggggccacgatttccgccccgagtacctgcaactgggccaactg
gccgaactgttcccgcatgtgccgcgcattgcgcttactgccactgccgatatgcgcacc
cgcgaagaaatcgtccagcgcctacacctgcaaggcgccgaacgcttcctctcgagcttc
gaccgacccaacatcttctaccgcatcgtgcccaaggaagcgccgcgcaagcagttgatg
gcttttctcggcgagcgccgcggcaacgccggtatcgtttactgcctgtcgcgcaagaag
gtcgacgaaaccgccgcattcctctgccagcagggcttcccggcgctgccgtatcacgcc
ggcctggctgccgagacacgcgcggccaaccagcaccgctttctcaacgaggaggggctg
atcatggtcgcgaccattgccttcggcatgggtatcgacaagcccaacgtgcgcttcgtt
gcccacctcgacctgcctaaatcgcttgaggcctattaccaggaaaccggccgcgccggc
cgtgacggcctgccgtccgatgcctggatggcctatggcctgcaggacatggtgatgctc
aagcagatgctgcagaactccgaaggcgatgagcgccacaagcgcatcgaacagcacaag
ctcgacgccatgctggcgctgtgcgaagaaacccgctgccgccgccagtcgctgctggcc
tacttcgatgaaaccctcgaacaaccgtgcggccactgcgacaactgtgtcgacaacatc
cagacttgggacgctaccgagccggcgcgccaggcgctgtcggcggtgttccgcaccggc
cagcgctatggtgtcggccatctggtcgatgtactgctgggcaaggacaacgagaaggtg
cgcaatttcggccacgagaagctgtcggtattcggcgttggcaagggcctggccgaggtc
gaatggcgttcgctgttccgtcagttggtggcgcgcggcctggtcgacatcgacctggaa
ggttacggcggcctgcgcctgtccgacagctgccggccactgctgcgcggcgaggtgacc
ttgcaactgcgccgtgacctcaagccgcagaccacggccaaggcctcgtcgtccagcggc
ggcagcccggccagccagctggtgcgtgccgaagagcgcgaactgtgggaagcgttgcgc
acgttgcggcgcaagttggccgaggagcacagcgtgccgccgtatgtcatcttccccgat
tcgacgctgctggaaatgctgcgcagccagccggtcagcctcagcgacatggcccaggta
agcggtgtgggcgcgcgcaagctggagcgctatggccaggcgttcctcgaagtactgaac
aacagtggcggcaccgaagaggcaccgaaagtggtgctcgacctgcgccacgaactggtc
agcctggcccgagccggcatgaccccggcgcagatcgccgggcagctcaactgcagcgag
aagaacgtctatagcctgctggccgaggcactgggccgccaggagctgagcctggagcaa
gccatcgacctgccggaagacctgatgatggaagtgcaggacgcgttcctggatggcgag
ggcgagttgccgccggtgtcggccattgcgccgcagttcggggcccgggtgccggagggc
gtgctgtattgcgtgcgcgcggcgctggcggcggaattcgaactgtaa
DBGET
integrated database retrieval system
