Pseudomonas putida GB-1: PputGB1_4053
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Entry
PputGB1_4053 CDS
T00650
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppg
Pseudomonas putida GB-1
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_4053
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PputGB1_4053
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PputGB1_4053
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
AAA_25
nSTAND_NTPase5
T2SSE
ResIII
AAA_30
ABC_tran
NACHT
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
ABY99943
UniProt:
B0KS20
LinkDB
All DBs
Position
complement(4503742..4507647)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDNLPIAAKREEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDEVAQHERSEGKSPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARQGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKHFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSLQVGELRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVPDEAWD
ESVNLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKSEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVEALVEDILLASLDSCILEGEQPLPRDGAALAGLAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLALYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgattgccgac
cgtcatcgtctgcgccggcaactgcacgaactgcgcaagcgtcccgatgaggcaaagctg
gcgcagtgggtggaaaaggtccaggcctcctgcgcccaggtcaccgcgcgccagcaaagc
gtgccaaccgtgcgctacgacgacaacctgccgatcgccgccaagcgtgaggaaatcaag
aaggccctggccgaacaccaggtgctggtgattgccggtgaaaccggctcgggcaagacc
acccagttgccgaagatctgcctggaactgggccgtggcagccatgggttgatcgcccac
acccagccacgccggatcgccgcgcgcagcgtggcggcgcgggtcgccgaagagctgggc
acacccttgggcgggctggttggctaccaggtgcgcttcgaagaccagagcgatgccaac
accctggtcaagctgatgaccgatggcatcctgctggctgaaacccagcatgaccgcttc
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaagacgctgctgcatcgccggccggacctgaaactgatcatc
acttcggccaccatcgacctggagcgcttctccaaacactttgacggcgcgccgatcatc
gaggtgtccgggcgcaccttcccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaggaaggtaaccagatcgaggacgacctcaccgtcgaccaggccatcctcgccacc
ctggatgaagtggcgcagcatgagcgcagcgagggcaaaagccccggcgatgtgctgatc
ttcctgccgggcgagcgggaaatccgcgatgccgcggagatcctgcgcaaggcgcaattg
cgccacaccgagattctgccgctgtacgcgcggctgtcgcctgccgaacagcagcgcatt
ttccagccgcacaccgggcgccgcgtggtgctggccaccaacgtcgccgaaacctcgctg
actgtacctggcatccgctatgtgatcgacaccggtactgcgcgtatcagccgctacagc
taccgcgccaaggttcagcgcctgcccatcgaagcggtgtcgcaggccagcgccaaccag
cgcaagggccgttgcggccgggtcgaaccgggcatatgcgtgcggctgtacagcgaagag
gatttcaacagccggccagcgttcaccgacccagagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgctgcacctgcgcctgggcgctatcgatgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgacggcttcaacctgctgcaggagctttcggcggtc
aaccgcgagaaccagctgacgcctatcggccgccagctggcgcgtttgccaatcgaccca
aggttgggccgcatgctgctcgaaggcgcacgccagggcagcttgcaggaagtgctgatc
gtcaccagtgcgttgtcggtgcaggacccgcgcgaacgcccgccagagcgccagcaggcc
gccgaccaggcgcacgcacagtggaaagacgtggactccgacttcgccgcgctggtcaac
ctgtggcgtggttttgaggaacagcgccaggcattgaccgccaacccgctgcgcaactgg
tgccgcaagcacttcctgaactacttgcgcctgcgtgagtggcgcgatgcccatcgtcag
ctggcgctgatctgccgcgacctgcagttgacggtgaacaaggaaccgaccgactaccag
aagctgcacaaggcgatccttagcgggctgctcagccagatcggccagaagaccgaagaa
ggcgactaccaaggggcccgccagcggcgcttctgggtgcatccgtcgtcgggcctgggg
cgcaagcgcccgcagtgggtaatggctgccgagctggtcgaaaccaccaagctttatgca
cgcatggtggccaagatcgaaccggactggatcgagccgctggccggtcacctgatcaag
aagaaccacttcgagccgcactgggagaagaagcgcgggcaggtggtggcctatgagcag
atcaccctctacgggctgattctggtcggccgtcggcctgtgcattacggcccgatcgac
ccggtcacctcacgcgagctgttcatccgtgaaggcctggtgggcggcgagattcagtca
cgggccaagtgcctggcggccaacaaacgcctgcttgaagagctcgacgagctggaggcc
aaggctcgtcggcgcgacatcctggctgacgaagaaacgctttatgccttctacgaagcg
cgtctgccggcggaaatccatcagaccgcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgttgatcatgcgcgaggaagacgtgctggcccgtgaggctagc
gaagtgaccgccgcgcagtaccctgacagcctgcaagtgggcgagctgcgcctgccgctg
agttaccacttcgagcccggccacccccgcgatggcgttaccgtgcgggtgccggcgccg
ctgctgccaagcttgccgggcgagcgcctggaatggttggtgccaggcctgctggaagcc
aagtgcgtggcgctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtaccggtg
ccggacttcgtcaaggcgtcgctggcgcgcatgaccttcggccaaggggcactgccgcag
gccctgggccaggagctgttgcgcatgaccggtgcgcgcgtgccggacgaggcctgggac
gaatcggtcaacttggtcgaaggccatctgcgcatgaacatcgaggtggtcgatggccag
ggcaagttcctgggcgaaggccgtgacctggccgaactgaccgcgcgctttgctgccgcc
agtcaggctgccctggccgtgccgcgtgatgcgaaaagcgaacagccggtgcaggccaag
gccttcagcgaagtgaagcagaccgctcagcagaagatcgccggcctgtcgatgaccgtg
tacccggcgctggtggaagacaacggcactgtacgtgaagggcgcttctcgacccaggcc
gaagccgagttccaacaccgccgtgcattgcaacggttgttgttgcagcaattggccgag
ccggccaagtttctgcgtggcaagctgccggggctgactgaactgggcctgctgtaccgt
gaattgggccgggtcgaggcgctggtcgaagacattctgctggccagcctggacagttgc
atcctcgaaggcgagcaaccgttgccacgtgatggtgcggccttggccgggctggccgag
cgtaagcgcggtagctgggccgagcatgccgagcgcctagcacgccagacgctggaggtg
ttgaaactgtggcatggcctgcagaagcgcttcaagggcaagatcgacctgagccaggcg
gtggcactgaacgacatcaagcagcagttgggcaacctggtttacccgggcttcgtgcgc
gaaacgccaggggcctggttcaaggaactgccgcgttacctcaaggcggtggaactgcgc
ctggagaagctggggtcgcaagtgcagaaggaccgggtgtggagcggtgagctggccaac
ctgtgggcgcagtacaaggcccgtgccgacaagcatgcccaggaaggcaagcgcgatgag
caactggccttgtaccgctggtggctggaggaatatcgggtgtcgctgtttgcccagcag
ctggggaccaaggtgccgatttccgacaaaagattgagcaaacaatggagtcaggtggaa
ggctaa
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