Pseudomonas putida GB-1: PputGB1_4056
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Entry
PputGB1_4056 CDS
T00650
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg00061
Fatty acid biosynthesis
ppg00071
Fatty acid degradation
ppg01100
Metabolic pathways
ppg01212
Fatty acid metabolism
ppg02024
Quorum sensing
ppg04146
Peroxisome
Module
ppg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PputGB1_4056
00071 Fatty acid degradation
PputGB1_4056
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PputGB1_4056
09145 Cellular community - prokaryotes
02024 Quorum sensing
PputGB1_4056
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ppg01004
]
PputGB1_4056
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppg04147
]
PputGB1_4056
Enzymes [BR:
ppg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PputGB1_4056
Lipid biosynthesis proteins [BR:
ppg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PputGB1_4056
Exosome [BR:
ppg04147
]
Exosomal proteins
Exosomal proteins of breast milk
PputGB1_4056
Exosomal proteins of breast cancer cells
PputGB1_4056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
DUF3710
Motif
Other DBs
NCBI-ProteinID:
ABY99946
UniProt:
B0KS23
LinkDB
All DBs
Position
complement(4510918..4512615)
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AA seq
565 aa
AA seq
DB search
MIENFWKDKYPAGITAEINPDEFPNIQAVLKQSCQRFADKPAFSNLGKTITYGELYALSG
AFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFND
SGAKALVCLANMAHLAEKVVPKTQVKHVIVTEVADLLPPLKRLLINSVIKYVKKMVPAYS
LPQAVRFNDALALGKGQPVTEANPQANDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCR
ALMGSNLHEGCEILITPLPLYHIYAFTFHCMAMMLIGNHNVLISNPRDLPAMVKELGKWK
FSGFVGLNTLFVALCNNEAFRALDFSALKITLSGGMALQLSVAERWKAVTGCAICEGYGM
TETSPVAAVNPAEANQVGTIGIPVPSTLCKIIDDAGNELPLGEVGELCVKGPQVMKGYWQ
REDATAEILDSEGWLKTGDIALIQADGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPG
VLQCAAIGVPDEKSGEVIKVFIVVKPGMTVTKEQVMEHMRANVTGYKVPRQIEFRDALPT
TNVGKILRRELRDEELKKQGLKKIA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaaatttttggaaggataagtacccagccgggattacggcggaaatcaatcct
gacgaattccccaatatccaggcagtactcaagcaatcctgccaacgctttgccgacaaa
ccggcctttagcaacctgggcaagactatcacttatggcgagttgtatgcgctgtcgggg
gcgtttgccgcctggctgcagcagcataccgacctcaagccgggtgaccgcattgccgtg
caactgcccaatgtcctgcaatacccggtcgcggtcttcggcgccatgcgtgccgggctg
atcgtggtcaacaccaacccgctgtataccgcgcgggagatggaacaccagttcaacgac
tccggcgccaaggccctggtgtgcctggccaacatggcccacctggccgaaaaggtggta
cccaagacccaggtcaaacacgtcatcgtcactgaagtggccgacctgctgccgccgctt
aagcgcctgttgatcaacagcgtgatcaagtacgtgaagaagatggtgccggcctacagc
ctgccacaagccgtgcgcttcaacgacgccctggcgttgggcaagggccagccggttacc
gaggccaacccgcaggccaacgatgtggccgtgctgcaatacaccggcggtacgaccggc
gtggccaaaggcgccatgctgacccatcgcaacctggtggccaacatgctgcagtgccgg
gcgctgatgggctcgaacctgcacgaaggctgcgagatcctcatcaccccgctgccgctg
taccacatctatgcctttaccttccattgcatggcgatgatgctgatcggcaaccacaac
gtgctgatcagcaacccgcgtgacctgccggccatggtcaaggaactgggcaagtggaag
ttcagcggttttgtcggcctcaacacactgttcgttgccctgtgcaacaacgaggcgttc
cgtgccctggacttctcggcgctgaaaatcaccctgtcgggtggtatggccctgcaactg
agcgtggccgagcgctggaaggccgttactggttgcgccatctgcgaaggttacggcatg
accgaaaccagcccggtggcggcagtgaacccggcggaggccaaccaggtgggcaccatc
ggtattccggtgccatcgaccctgtgcaagatcatcgacgacgccggcaacgagctaccg
ctgggcgaagtgggcgagctgtgtgtgaagggcccgcaggtgatgaagggctactggcag
cgcgaagacgccactgccgagattctcgacagcgaaggctggctgaagaccggtgacatc
gccctgatccaggcggacggttacatgcgcatcgtcgaccgcaagaaggacatgatcctg
gtttctggcttcaacgtgtaccccaacgagctggaagacgtgctggcggccctgccgggc
gtgctgcagtgtgcagccattggtgtgccggacgagaagtcgggtgaagtgatcaaggta
ttcatcgtggtcaagccgggcatgaccgtgaccaaggagcaggtgatggagcacatgcgt
gccaacgttaccggctacaaggtgccgcgccagatcgagttccgcgacgcactgccgacc
accaacgtgggcaagatcctgcgccgcgaattgcgcgatgaagaactgaagaagcaaggc
ttgaagaagatcgcctga
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