Pseudomonas putida GB-1: PputGB1_4074
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Entry
PputGB1_4074 CDS
T00650
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PputGB1_4074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppg03021
]
PputGB1_4074
Transcription machinery [BR:
ppg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PputGB1_4074
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
PhyR_sigma-like
HTH_24
HTH_11
HTH_38
HTH_3
MarR_2
HTH_28
HTH_36
HTH_31
PCI
HTH_29
Fe_dep_repress
TnsD
HTH_20
HTH_IclR
HTH_10
HTH_40
MarR
Rv2175c_wHTH
HTH_AsnC-type
HTH_SB
HTH_Tnp_4
UPF0122
HTH_7
HTH_68
GerE
DUF2774
Terminase_5
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ABY99964
LinkDB
All DBs
Position
complement(4528553..4529071)
Genome browser
AA seq
172 aa
AA seq
DB search
MYKVPPAPHDDMHCLYRDHSGWLQGWLRRRLGDRERAADLTHDTFLRLIASTVAHPLREP
RHFLATVAKRVMVDHLRRRSLEQAYLEALALEPELVEASPEQRVLLLETLLQLDAMLDGL
NHKVRQALFLSHLEGLSYAEIAERLGVSVSSVTKYIAKATEQCLLFALDAER
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaaggtcccgcctgcaccgcacgatgacatgcactgcctgtaccgcgaccacagc
ggctggctgcaaggctggctgcgccggcgtctgggcgatcgcgagcgggcggcggacctg
acccatgacacgttcctgcgcctgatcgccagcacggtggcccacccgctgcgcgagccg
cgtcattttctggcgacggtggccaagcgggtgatggtcgaccatttgcgccggcgctcg
ctggagcaggcctatctggaagccttggcgctggagccagaactggttgaggcgtcaccc
gagcaacgggtgctgctgctggaaacgctgttgcaactcgatgccatgctcgatggcctg
aaccacaaggtgcgccaggcgctgtttctttcccacctcgaaggcttgagctacgccgaa
attgccgaacgccttggggtgtctgtcagttcggtgaccaaatacatcgccaaggccacc
gagcagtgcctgctgtttgcgctggatgccgagcggtga
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