Pseudomonas putida GB-1: PputGB1_4554
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Entry
PputGB1_4554 CDS
T00650
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputGB1_4554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_4554
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PputGB1_4554
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputGB1_4554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
ABZ00441
UniProt:
B0KGP5
LinkDB
All DBs
Position
5089179..5090648
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AA seq
489 aa
AA seq
DB search
MLKALKKIFGKGDAAPQAVAPAASVTPPAPTPASEPRPAAKPAAPRANPTPKAERPAAVT
PAPAAEKPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGF
PYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALI
IAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDF
NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNL
AKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDE
VRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHV
INFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDEL
LKPVPRKHH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaggcactcaagaaaatattcggcaagggagacgccgcgccacaggccgtcgct
cctgctgccagcgtgacgccaccggcgcccacgcccgccagcgagccccggcccgcagcc
aaaccggccgccccgcgcgccaaccccacccccaaggctgagcggcctgccgccgttacg
ccagcgccagcagccgagaagccggccaaggacaaaccgcgtcgcgagcgcaagcccaaa
ccgcaggccagcctatggaagcccgaagacttcgtggtcgagccgcaggaaggcaaaacc
cgtttccacgacttcaagctgtccaacgagctgatgcacgccatccacgacctgggcttc
ccatactgcacgccgattcaggcgcaggtactgggttacaccctgcgtggccaggacgcc
atcggccgggcccagaccggtaccggcaagaccgccgcattcctgatctcgatcatttcc
cagttgcagcaaacgcccccgcccaaggaacgctacatgggcgaaccgcgcgcgctgatc
atcgcccctacccgcgagctggtggtgcagatcgccaaggacgccgcggccctgaccaag
tacaccggcctgaacgtgatgagcttcgtcggtggcatggacttcgacaagcagctcaag
gccctggaagcgcgccactgcgatatcctggtggccaccccgggccgcctgctggacttc
aatcagcgcggcgaggtgcacctggacatggtcgaggtgatggtgctggacgaagccgac
cgcatgctcgacatgggcttcatcccccaggttcgccagatcattcgccagacgccgccg
aagagcgagcgccagaccctgctgttctccgccaccttcaccgacgacgtgatgaacctg
gccaagcagtggaccaccaacccggccatcgtcgagatcgaaccggaaaacgtcgccagc
gaaacggtcgagcagcatgtgtatgccgtggccggcagcgacaagtacaagctgctgtac
aacctggtgacccagaacaagtgggaacgggtaatggtgttcgccaaccgcaaggacgaa
gtgcggcgtatcgaagaaaagctggtgcgtgacggcatcaatgccgcccagctgtcgggc
gacgtgccgcaacacaagcgcatccgtaccctggagagcttccgtgaagggcgcatcacc
gtgctggtggcgaccgacgtggcggggcgtggtattcacatcgatggtatcagccatgtg
atcaacttcaccctgccggaagacccggacgactacgtgcaccgcattggccgaactggc
cgtgcggggagcagtggtgtgtcgatcagctttgccggtgaggatgattcctaccagttg
ccggcgatcgaagaactgctggggcgcaagatcaagtgtgaaatgccgccggatgagctg
ttgaagccggtgccgcgcaagcaccactga
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