Pseudomonas putida GB-1: PputGB1_5029
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Entry
PputGB1_5029 CDS
T00650
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputGB1_5029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_5029
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PputGB1_5029
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputGB1_5029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABZ00914
UniProt:
B0KM04
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All DBs
Position
5616446..5618326
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AA seq
626 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQRIQDGDLMGFDASQVEAEKPEVRERPQNSGRGGRNQQGRGEGGKDANGGR
KDKGKAKQQAAEKPADKENSGDKQQQPRKPRDKKPRQQQQASSNSVPKVPADRDPEEFLD
DDVDNFGNRADYVSPYQGKNQGRNRRPGGGAGQGQNSGQRSNAGGQGQARSGGQQRSGGS
GGGGEKRPARANNGGGARRDGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLDR
YPTPEQLDDVPTRPRGERPALLTRKG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tacacccagccgacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcacagacaggtacgggtaaaaccggcggcttcgccctgccgatcctc
gagcgcctgttcccggccggccaccccgacaagtcgcagcgtcacggcccgcgccagccc
cgcgtgctggtcctgaccccgacccgcgaactggcagcccaggtgcatgacagcttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccattgccaaaggcgttgacgtgctggtcgcctgcccaggccgcctg
ctcgacctggccggccaaggcaaggtcgacctggcccacgtggaaatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcattcacgacgtcaagaaggtcctcgcccgc
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagcttctgcacaacccggagcgtatcgaggtcacgccgccgaacaccacc
gtcgagcgtatcgagcagcgcgtctatcgcctgcccgccagccacaagcgtgcactgctg
gcacacctgatcacccagggcgcctgggaacaggtactggtgttcacccggaccaagcac
ggcgccaaccgcttggccgagtatctggaaaagcacggcctgaccgccgctgcaatccac
ggcaacaaaagccagaacgcccgcaccaaagccctggccgatttcaaggccaacagtgtg
cgcgtgctggtcgccaccgacatcgccgcccgtggcctggacatcgaccaactgccgcac
gtggtcaacttcgagctaccgaatgtcgaggaagattacgttcaccgcatcggccgtacc
ggccgtgccggtcgctcgggcgaagccatttccatggtcgcgccagatgaagagaagctg
ctcaagagcatcgagcgggtgaccaagcaacgcatccaggatggcgacctgatgggcttc
gacgccagccaggtagaagccgaaaagcctgaagtgcgcgagcgcccgcagaacagcggc
cgcggtggccgcaaccagcagggccgcggcgaaggcggtaaagacgccaacggcggccgc
aaggacaaaggcaaggccaagcagcaagctgcagaaaagccggccgacaaggaaaacagc
ggcgacaagcaacagcagccgcgcaagccgcgtgacaagaagccacgccaacagcagcag
gccagcagcaacagcgtgccgaaagtaccggccgaccgcgacccggaagaattcctggac
gacgatgtcgacaacttcggtaaccgtgccgactacgtcagcccgtaccaaggcaagaac
caaggccgcaatcgccgcccgggtggcggtgcaggccagggccagaatagcggtcaacgc
agcaacgctgggggccagggccaagctcgcagtggcggccagcagcgtagtggcggcagc
ggtggtggcggcgaaaagcgccctgcccgcgccaacaacggtggcggtgcccgtcgtgac
ggcggtggccgtggtcgcccagcccgtgatgacgcagcccggcaggagcctgccgtgcgt
aacccacgccagccagaaaaacaaccggtgatcatccgcaaggaatccaagctcgaccgt
tacccaacgcctgagcagttggatgacgtgccgacccgaccacgcggtgagcgcccggcc
ttgttgacccgaaaaggctga
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