Pseudomonas putida GB-1: PputGB1_5341
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Entry
PputGB1_5341 CDS
T00650
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PputGB1_5341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_5341
Enzymes [BR:
ppg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PputGB1_5341
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PputGB1_5341
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
CbiK
Motif
Other DBs
NCBI-ProteinID:
ABZ01223
UniProt:
B0KQ93
LinkDB
All DBs
Position
5965090..5965869
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AA seq
259 aa
AA seq
DB search
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPAQGGVALYSRMQPKAVITGLGFETADRYGRYLQADFDKVSIASLLLPSGMNGDEDLN
QKFKLMDDFAKYLDKQRRKRREYIYCGSFYVAQQKLDIKNWRDSQQSPGFLAPERAWMDA
ITGEMGYVDALREVSREGDQYSWWPDNEQAEMLNLGYRFDYQILTPGLRRFVRNARLPRQ
PRFSQHAPLIVDYDWTLTI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcatcagtgtgaacgttaatggcattcaggctgcagccgagcgtggattgctc
agctggttgcaagcccagaatgccgacgtcatctgccttcaggatacccgcgcctcggcc
tttgaactcgacgacccagctttccagctcgatggctatttcctttatgcctgcgacgcg
gaggtgcccgcccaaggtggtgtggccctttattcgcgcatgcagcccaaggcagtcatc
accggcctgggcttcgagacagccgaccgctacgggcgttacctgcaagcagatttcgac
aaagtcagtattgccagcctgctgttgccttcgggcatgaacggcgacgaagacttgaac
cagaagttcaagttgatggacgacttcgccaagtacctggacaagcagcgtcgcaagcgt
cgcgaatacatctactgcggctcgttctacgtggcgcagcagaagctcgacatcaagaac
tggcgtgacagccagcagtcgccgggtttcctggcgccggaacgcgcctggatggatgcg
atcactggcgagatgggctacgtcgatgccctgcgcgaagtcagccgtgaaggcgaccag
tacagctggtggccagacaacgagcaggccgagatgctcaacctgggctaccggttcgac
taccagatcctcacgccgggcctgcgccgcttcgtgcgcaatgctcgcctgccgcgtcag
ccgcgcttctcccagcatgcgccgctgatcgtggactatgactggacgttgaccatctga
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