Pelodictyon phaeoclathratiforme: Ppha_0316
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Entry
Ppha_0316 CDS
T00731
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ppha_0316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pph03021
]
Ppha_0316
03400 DNA repair and recombination proteins [BR:
pph03400
]
Ppha_0316
Enzymes [BR:
pph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ppha_0316
Transcription machinery [BR:
pph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ppha_0316
DNA repair and recombination proteins [BR:
pph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ppha_0316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
ACF42649
UniProt:
B4SBX4
LinkDB
All DBs
Position
301456..302439
Genome browser
AA seq
327 aa
AA seq
DB search
MIYQMQMPAKIEVDESSHTDCFGRFIAQPLERGYGVTLGNVMRRVLLASLPGTAITGIKI
DGVFHEFAAIDGVREDVPEIVLNLKKVRFKSTCKRNCKTSLTLVGPMDFTAGDIIAQEGE
FEVLNKDMHVATINAGATVKIDLYIGRGRGYMPAEENRPEGMPIGYIAVDAIYTPIRNVK
FTVENTRVGQRTDYEKMILDVETDGSVSPDDSISLAGKIITDHVTFFANFSPTEEEFTEE
EFKQQDDEFETMRRLFHTKIEDLDLSVRSHNCLRLAEIDTIGELVSHKEDELLNYKNFGK
KSLTELKEQLEKFDLKFGMDITKYQMK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgatataccagatgcagatgcctgcaaaaatagaggttgacgaatcttcccatacggat
tgtttcggcaggttcattgcccagccgctcgagcgcggttatggcgtgacccttggaaac
gttatgagaagggttcttctggcctcactaccgggaactgcaataacagggatcaagata
gatggtgtttttcatgagtttgctgccattgatggtgttcgtgaggatgtgcccgaaatt
gttctgaaccttaaaaaagtacgtttcaagtctacctgtaaaagaaactgcaagacctcg
ttgacccttgtcggccctatggattttacggctggtgatattattgcacaggagggtgag
ttcgaggtgttgaacaaggatatgcatgttgcgaccataaatgccggtgcgacagtcaag
atcgatctctatatcggaagaggacgtggttatatgcctgccgaggaaaacaggccagaa
gggatgccaataggttatattgccgttgacgctatttatacaccgatcagaaatgtgaag
tttactgtagaaaatacgcgcgtcgggcagcggaccgattatgaaaaaatgattcttgat
gttgagacagatggttctgtaagtcctgatgactccatcagtcttgcaggtaaaatcatc
actgatcatgttaccttttttgccaatttctcacctacagaagaggagtttaccgaagag
gaattcaaacagcaggatgacgagtttgagacgatgcgcaggctctttcacaccaaaatc
gaagatctcgatctttctgttcgttcgcacaactgcctcagacttgcagaaatcgatacc
attggtgaactcgtctcgcataaggaggacgaattgcttaattacaagaactttggcaag
aagtcactcacggaactcaaggaacagcttgaaaagtttgacctgaagtttggtatggat
attaccaagtatcagatgaaatga
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