Pelodictyon phaeoclathratiforme: Ppha_0924
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Entry
Ppha_0924 CDS
T00731
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ppha_0924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pph03019
]
Ppha_0924
03009 Ribosome biogenesis [BR:
pph03009
]
Ppha_0924
Enzymes [BR:
pph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ppha_0924
Messenger RNA biogenesis [BR:
pph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ppha_0924
Ribosome biogenesis [BR:
pph03009
]
Prokaryotic type
rRNA helicases
Ppha_0924
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACF43211
UniProt:
B4SF64
LinkDB
All DBs
Position
959112..960911
Genome browser
AA seq
599 aa
AA seq
DB search
MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL
SNIDLEHAEPQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRMLRRG
VHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVAL
FSATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHKIDILTRILEVEPF
DGMLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIVIATDVA
ARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYSIERATH
SRIELMELPTTEVINNKRIAKFNQRITDTIAAEDLGFFTKLIEQYCHEHDVSAIEAAAAL
ASMVQGETPLLLSNKPEKSRSYEEREGSGRDRGSDRERSTDRGRSSDRDRGPVKKRTKGE
TYGDEGKERYRLEVGSEHGVKAGNILGAILNEVGLDPESVGHISINEGYSTVELPQGMPD
NVFHELRTVRVCGRQLRLSKMDDQERESAYAPKKSFKKPFKPAGKETAFFTGNKKKRKG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggattttctcggcctgcagcttgcagaaccattaatgagggcacttgccgatgtcggg
tatgagaaccctactccaattcaggcccagaccatcccactgattcttgaaggacgtgac
gtccttggccaggcacagaccggtacaggaaaaactgccgcttttgccctgccaattctc
tccaatattgatcttgaacatgctgaaccccaggcccttgtgctggctcctacaagagag
cttgccattcaggttgccgaggcgtttcagcgttatgctgaacatctcaagggttttcat
gttgtcccgatttacgggggacaggactacggaattcagcttcgcatgctgagacgtggt
gtgcatattgttgtcggtacacctggtcgagttatggatcatatgcgtcgtggttcgctc
aatcttgcttcgctgaaatgtctggtactggacgaagccgatgaaatgctccgcatggga
tttattgacgatgttgagtggatccttgatcagacaccaaaaggtcgtcaggttgctctt
ttttcggcaaccatgccgccggttattcgccgtattgcgcaaaagtatctgcataatcct
gcggaagtcaccatacagacaaaaacgacaaccgttgataccattcgtcagcgttactgg
attgtcggcggaagtcacaagattgacattctgaccagaatccttgaagttgagccgttt
gatggcatgcttatttttgtacgcacgaaaaccatgacacttgagctggctgaaaagctt
caggccaggggatatggcgcggcagctcttaatggcgatatgccccagaatcagcgtgag
cgtacggttgaccaactgaagaacggagcgttgagcattgttattgccaccgatgttgcg
gcgcgaggccttgatgttgagcgcatcagccatgtgatcaattacgatattccttccgat
acagaatcctatgtgcaccgcattggacgaaccggtcgtgcaggtcgcgccggtgatgcc
attctgtttgtctctccgagagagaaaaatatgctctactctattgaaagggcaacacac
agtcgtattgagctgatggagcttccgacgacagaggttatcaacaacaagaggatagca
aagtttaaccagcggattaccgataccattgccgctgaagatcttggattctttaccaag
cttatcgagcagtactgtcatgagcatgacgtttcggcaattgaggctgcagcagcgctt
gcttcgatggttcagggagagacaccgcttcttttatccaacaagcctgaaaaatcgcgt
tcttatgaagagcgggaaggatcaggcagggatcgtggttctgacagagaacgcagcaca
gacagaggccgcagttctgacagggatcgtggaccggttaaaaagagaaccaagggtgaa
acctatggtgatgaaggcaaagaacgctatcgtcttgaagttggcagtgagcatggtgtg
aaagcgggcaatattcttggagctatcctgaatgaagttggtcttgatcctgaatcggtt
ggtcatatttcaattaatgagggctacagcacggttgaactgccccagggtatgccggat
aacgtttttcatgaattgagaacagtccgggtttgtggtcgtcaattgcggttgagcaaa
atggatgaccaggagcgtgagtctgcctacgctcccaaaaagagttttaaaaagcccttt
aaaccggcaggaaaagagaccgcattctttaccggtaacaaaaagaagcgtaagggttaa
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