Pelodictyon phaeoclathratiforme: Ppha_1433
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Entry
Ppha_1433 CDS
T00731
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ppha_1433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pph03400
]
Ppha_1433
Enzymes [BR:
pph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Ppha_1433
DNA repair and recombination proteins [BR:
pph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ppha_1433
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
AAA_30
PDDEXK_1
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACF43690
UniProt:
B4S9Z4
LinkDB
All DBs
Position
complement(1504575..1508174)
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AA seq
1199 aa
AA seq
DB search
MKPLNHAAVELSGINLIEASAGTGKTYAIASLYLRLLLEKELLPEQILVVTYTEAATQEL
RGRIRSRIREALEVMEGCDTSDIFLGELYETASLSGMKKVRDLLERALGAFDTASIFTIH
GFCLRVLQDNAFESGSLYDTELVTDQTELLRGIVDDFWRVHFFGESAPLLGYALRNRLTP
ETFLSLLKNLHAGTGVEVIPDFSDEQITAIERECSAAYSDASSIWMGHKGSITELLTTEK
GLSRSAKYYRADLLEPLFSGMDAFVEGGNAYDLFESFPKLTLEGILEGTKSKGVAPSHPF
FLSCQRLQDAVERRLLALKAELLRFYQKNLPLRKRIGNIRFFDDLLEDLYHALLPEQGGD
ALAEIIRKKYCAALIDEFQDTDRQQYEIFRSIYATSGLPLFLIGDPKQAIYSFRGADIFA
YIRAAREVGEERRFTLTENWRSSPLLLQAFNTLFNNTMRPFLHDEILYHPLASGKSEPER
ADGAGEDLEPMQLWLMDSSDEKSGMLTVDDAGAWASTAVAGEIVRILQDGQTLFSGRPCS
AGDIAVIVRTHRQAALMLNALHNRGVAGVMRSNQSIFLSREAEEVRILLSALADPGNEPK
VRAALVTDLLGRSGNDIERFHDDEASWIACLRQFRLYHELWHERGCMVMSRELMAKEEVR
GRLLSYPDSSGERRLTNLLHCFELLHREEHERGTGMEGLVAWFSERTGAADETDEYQIRL
ETDDAAVKIVTIHVSKGLEYPVVFCPFLWGGGNRKGEVLMFHDDAGHLVKDFGSSGYESN
RRLADKESLAESLRLLYVALTRAKYRCYLFSGKTRSENSPINYLLHASSATRVSENQASA
LAVESKTLTTGMMAEQLESLAESSEESIGFTLLTREAVDGMARLSRTDRESQHDALVLRH
FSGTIDTTWRVSSFTSFSRHEPISTELPDRDEPQADGGVPSAIVAPAGHEKSIFTFPRGA
QAGIFMHGIFEKLDFASPSETAIHELVAKGLERYNYKEEWQPHITAMIHNVLETPLASRD
SLFTLGALCQKSWITELEFFFPLRFINSSHLAGLLLRHGLLRSGVDLASLAPMLQFSPVR
GMLMGFMDMVFEQNGRYYLLDWKSNHLGNSEEDYAQDAMSVAMQKHLYPLQYLLYTVALN
RYLSLRVKNYRYSTHFGGVIYVFLRGVNREHGENFGFFRDLPPEELIEALTNLLIDEDK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccactgaaccatgcagccgtagaactctccggcatcaacctgatcgaggccagt
gccgggacggggaagacctatgctattgcctcgctctaccttcgcctgcttctggaaaaa
gagcttctgccggaacagattcttgtggtaacgtataccgaagcggctacgcaggagctt
cgcggcagaatccgcagtcgtatccgtgaggcgctcgaggtgatggagggttgcgatacc
agcgacatattccttggtgagctatatgaaacggcctctctgagtgggatgaaaaaggtg
cgcgacctccttgaacgggcgctcggcgcttttgataccgcttcgattttcaccattcac
ggcttctgccttcgggtgctgcaggataacgccttcgagagcggctcactctatgatact
gaattggtgactgatcagacagagctgcttcgtggtattgtggatgatttctggagagta
cattttttcggtgagtctgcgccactgctcggctatgccctgcgtaaccgcctcactcct
gaaaccttcctgtcgctgttgaagaaccttcatgccggaaccggggttgaggttatccct
gatttcagtgatgagcagataacggcgattgagagggagtgctcggctgcttacagtgat
gccagttcaatttggatggggcataaaggctcgataactgaacttctgaccactgagaag
ggtttgagccgttcagccaaatattaccgcgctgacctgcttgaaccgcttttttccggg
atggatgcttttgttgaaggaggcaatgcgtatgacctgtttgagtcattcccgaaattg
acccttgagggtattcttgaaggcaccaaaagcaaaggtgtggcgccctcccatcccttt
ttcctttcctgccaacggctccaggatgcagtggagaggcgtcttcttgccctcaaggct
gaactgcttcgcttttatcagaagaacctgccattgcgcaaacgaatcggaaatatccgt
ttttttgatgatctccttgaggatctctaccatgcgcttttgccagagcagggcggggat
gcacttgccgagattatcagaaaaaagtattgcgcagcacttattgatgagtttcaggat
accgaccgccagcagtatgagatcttcaggagcatctatgcgacatccgggttgccgctt
tttctaatcggcgatccaaaacaggccatttacagtttccgtggtgcggatatcttcgcc
tacataagagcagcgcgtgaggtaggtgaggagcggcgctttaccctgacggagaactgg
cgctcttctccgctgctgcttcaggcgttcaataccttgttcaacaatacgatgaggccg
tttctccatgatgaaattctctatcacccgctcgcttcagggaaaagcgagccggagagg
gcggatggagcgggggaagatcttgagccgatgcagctctggctgatggattcgagtgat
gagaagagcggcatgttgactgtggatgatgctggcgcctgggcttcaacggccgttgcc
ggtgagattgtccgaatcctgcaggatggtcaaacccttttcagcggcaggccatgcagt
gccggagatattgccgttattgtgcgcacgcaccggcaggcggctcttatgctcaacgcc
ttgcataaccggggcgttgccggggtcatgcggagcaatcagagtatctttttgtcgaga
gaggctgaagaggtgcgcatcctgctctcagccctcgctgatccgggcaacgagccaaag
gtacgtgcggcgctggtgaccgatctgcttggcaggtcgggcaacgatattgagaggttt
catgatgatgaagcgtcatggatagcctgtctcaggcagttccgactctatcacgagctc
tggcatgagcggggatgtatggtgatgagccgggaactgatggcaaaggaggaggtgcgt
ggacgtctgctcagttaccctgactcttcgggtgagcgaaggctgaccaatctgctgcac
tgttttgaattgctgcaccgtgaggagcatgagcggggaaccggtatggagggacttgta
gcttggttcagtgaacggacaggggctgcggatgagacggacgagtatcaaatccgtctt
gaaaccgatgatgctgccgtaaaaatcgttaccattcacgtcagcaagggactggaatat
ccggttgttttctgcccctttctctggggaggcggaaaccgcaaaggggaggtgctgatg
ttccatgatgatgcggggcatctggtgaaggatttcggctcttccggctatgagagtaac
cggcggcttgccgacaaggagtcgcttgccgaaagcctcagactgctctatgtggcactg
acgagggccaagtatcgctgctatcttttcagcggtaaaacccgttcggagaactcgccg
atcaactatctgctccatgcatcgagtgcaacaagagtttcggaaaatcaggcttcggcg
cttgctgttgaatcaaaaaccctgaccaccgggatgatggccgagcagttggagtcgctc
gccgaaagttcagaagagtcaatcggcttcacgttgttgacgcgcgaagcggttgacggg
atggccagactctcccggacggatagggagtcacagcatgatgcccttgtactgcgccac
ttcagcggaaccattgacaccacctggcgggtttcaagcttcacctcgttcagccgccat
gaaccgataagcaccgagctacctgatcgcgatgaaccacaggctgatgggggagtcccc
tccgcaatcgttgctcccgccggtcatgaaaaaagcatctttacctttccaaggggggct
caggccggaatttttatgcacgggatttttgagaagcttgattttgcctctccctccgaa
acggctatccatgagcttgttgcaaaagggcttgaacgctataactataaagaggagtgg
cagccgcatatcacagccatgattcataacgttcttgagacgcctcttgcttcgcgcgac
agcctgtttactcttggcgctctctgccagaaaagctggatcactgagctggaatttttc
tttccgctccggtttatcaattcatctcatcttgctggccttctgctccgtcatggcctt
ctgcggagtggagttgaccttgcctcgcttgcacccatgctgcagttcagcccggtcagg
gggatgcttatgggcttcatggatatggtttttgagcagaatggccgctactatctgctt
gactggaaatccaatcatcttggtaacagcgaagaggattacgctcaggatgccatgagt
gtggctatgcaaaaacacctctacccgctgcaatacctgttgtataccgtggctctcaac
cgctacctgtcgttaagggtcaaaaactaccgttacagcacccatttcgggggagtaatt
tatgtctttcttcggggagtgaacagggagcacggggaaaacttcggctttttccgcgac
cttccccctgaagagttgattgaagcgctgacaaatctgctgatagatgaggataaataa
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